Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst5g00405 | ATGAGCTCCGACACGACGTCGTATTGGTGCTACAGTTGCACGCGCTTCGTTCACATCCAGGAGCACCACGACGTCCTTTGCCCGCGCTGCCACGGCGGTTTCGTCGAGAAGGTCCAGGCGGGAAACTCGGCCGCCGTCTCGCTGCTAGGCGATGGCGCTTCGAGAAGGCAGGGGTTACGCCGGCGGCGCCGCAACGGCGGGAGTCACCCGCCTTTCAACCCGGTGATCGTGCTCCGGGGACCGGGGGAGGATGAGGAGAGCAGCTTTGAGTTATACTACGACGGCGACGACGGCGCGGGTCTCCGGCCGCTGCCGTCGACGATGTCGGAGTTTTTGCTCGGATCGGGCTTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCAACGGTGCAAATCACCGAGTCTCAGGTCGCGACGGAGACGCACTGCGCAGTGTGCAAAGAGCCCTTCGAGCTCGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGTCATGAATTGCCGTCGGAGCAAGCGCCTTCGGAGAGCAGAGTCCCCGGCCAGATCGAGGAGGAAGCGGTAGGTTTGACCATATGGAGGTTGCCCGGCGGCGGATTCGCCGTCGGGAGGTTCGCCGGCGAGAGCCAATTGCCGGTGGTGTACACGGAGATGGAGAGTGATGGGAATTCGAACGAAGGTTCCAGAAGAATCTCTTTGTCAGTTGGAAGCGGGAGGGTTAGGGAAAGTCGTGGTGGTGGATTAGGCAGAATATTCCGTAGTTGGTTTGGGAGAATCGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCTCTCTTCAATAGAAGAAGAAGTAGTACCACGAGAACCTGGGTTTTGGAAAATTGA | 987 | 0.6008 | MSSDTTSYWCYSCTRFVHIQEHHDVLCPRCHGGFVEKVQAGNSAAVSLLGDGASRRQGLRRRRRNGGSHPPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQITESQVATETHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAPSESRVPGQIEEEAVGLTIWRLPGGGFAVGRFAGESQLPVVYTEMESDGNSNEGSRRISLSVGSGRVRESRGGGLGRIFRSWFGRIGALTRSRSLSTSLFNRRRSSTTRTWVLEN | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst5g00405 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 205 | IPR001841 | - | |
Spst5g00405 | 328 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 61 | 209 | - | - | |
Spst5g00405 | 328 | CDD | RING-H2_RNF126-like | 164 | 205 | - | - | |
Spst5g00405 | 328 | MobiDBLite | consensus disorder prediction | 55 | 74 | - | - | |
Spst5g00405 | 328 | SUPERFAMILY | RING/U-box | 144 | 210 | - | - | |
Spst5g00405 | 328 | Pfam | zinc-ribbon | 6 | 37 | IPR039525 | GO:0061630 | |
Spst5g00405 | 328 | FunFam | E3 ubiquitin-protein ligase RING1-like | 126 | 211 | - | - | |
Spst5g00405 | 328 | Pfam | Ring finger domain | 163 | 205 | IPR001841 | - | |
Spst5g00405 | 328 | Pfam | Protein of unknown function (DUF1117) | 228 | 316 | IPR010543 | - | |
Spst5g00405 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 211 | IPR013083 | - | |
Spst5g00405 | 328 | SMART | ring_2 | 164 | 204 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst5g00405 | Spst-Chr5 | 3254605 | 3255591 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst5g00405 | 93 | 216 | C3H Transcription Factor Family | AT5G01980 | 40.323 | 5.48e-26 | 105 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst5g00405 | K11982 | - | gmx:100792020 | 516.924 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst5g00405 | 5 | 3254605 | 3255591 | Spst2g02324 | 2 | 22604739 | 22605818 | PCT |