Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00405 ATGAGCTCCGACACGACGTCGTATTGGTGCTACAGTTGCACGCGCTTCGTTCACATCCAGGAGCACCACGACGTCCTTTGCCCGCGCTGCCACGGCGGTTTCGTCGAGAAGGTCCAGGCGGGAAACTCGGCCGCCGTCTCGCTGCTAGGCGATGGCGCTTCGAGAAGGCAGGGGTTACGCCGGCGGCGCCGCAACGGCGGGAGTCACCCGCCTTTCAACCCGGTGATCGTGCTCCGGGGACCGGGGGAGGATGAGGAGAGCAGCTTTGAGTTATACTACGACGGCGACGACGGCGCGGGTCTCCGGCCGCTGCCGTCGACGATGTCGGAGTTTTTGCTCGGATCGGGCTTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCAACGGTGCAAATCACCGAGTCTCAGGTCGCGACGGAGACGCACTGCGCAGTGTGCAAAGAGCCCTTCGAGCTCGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGTCATGAATTGCCGTCGGAGCAAGCGCCTTCGGAGAGCAGAGTCCCCGGCCAGATCGAGGAGGAAGCGGTAGGTTTGACCATATGGAGGTTGCCCGGCGGCGGATTCGCCGTCGGGAGGTTCGCCGGCGAGAGCCAATTGCCGGTGGTGTACACGGAGATGGAGAGTGATGGGAATTCGAACGAAGGTTCCAGAAGAATCTCTTTGTCAGTTGGAAGCGGGAGGGTTAGGGAAAGTCGTGGTGGTGGATTAGGCAGAATATTCCGTAGTTGGTTTGGGAGAATCGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCTCTCTTCAATAGAAGAAGAAGTAGTACCACGAGAACCTGGGTTTTGGAAAATTGA 987 0.6008 MSSDTTSYWCYSCTRFVHIQEHHDVLCPRCHGGFVEKVQAGNSAAVSLLGDGASRRQGLRRRRRNGGSHPPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQITESQVATETHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAPSESRVPGQIEEEAVGLTIWRLPGGGFAVGRFAGESQLPVVYTEMESDGNSNEGSRRISLSVGSGRVRESRGGGLGRIFRSWFGRIGALTRSRSLSTSLFNRRRSSTTRTWVLEN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00405 328 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Spst5g00405 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 209 - -
Spst5g00405 328 CDD RING-H2_RNF126-like 164 205 - -
Spst5g00405 328 MobiDBLite consensus disorder prediction 55 74 - -
Spst5g00405 328 SUPERFAMILY RING/U-box 144 210 - -
Spst5g00405 328 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Spst5g00405 328 FunFam E3 ubiquitin-protein ligase RING1-like 126 211 - -
Spst5g00405 328 Pfam Ring finger domain 163 205 IPR001841 -
Spst5g00405 328 Pfam Protein of unknown function (DUF1117) 228 316 IPR010543 -
Spst5g00405 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Spst5g00405 328 SMART ring_2 164 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00405 Spst-Chr5 3254605 3255591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00405 93 216 C3H Transcription Factor Family AT5G01980 40.323 5.48e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00405 K11982 - gmx:100792020 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00405 5 3254605 3255591 Spst2g02324 2 22604739 22605818 PCT