Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00403 ATGAAAGAACAAGGCTTTGGAGATAAGATGAATGCAATAACAACAATTCTGCCTCTCACTGCAAACACCTTTCTTTGTTTTGCCAATTCTCATCTTCATCTCAGATCTCTTCCACCAACTTGTGGCATACCCACTTGTAAAATTAGCTATGCAAGTCGTTTCCACCATTCACAGTGGAAGCATCAGAAAAAGGAAAGATGGGGCAATAGAATGATGGTTGTGAGAGCAAGGCGTGGCGAGTCTCCGTACGAAGTTTTGGGTGTGTCTCCATCGGCAACAGTCGACGAAATCAAAAGGGCGTACCGGAAACTTGCTCTTAAGTATCATCCCGATGTCAATAAAGAGGAAAAGGCACAGGAAAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTATTCTCAAGGAAGCCAAAGTAGGAATGCACAACCTGAAGAAGAATTTTATGGACTAGGTAATTTTATGAGGGATGTTCAAATAACAATAGAGGACTTCTTCAAGGATCTTCAAGAAGAATTCAGAAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAGTTTGTGGAGTTCCTTGAGAAAGAGCTGAATATTGCAGATCAAAATGATGATTATAAAACACCTGAGGGAGGAAATGCATCCAACTTTTCTGGGAGTGAGACACCAAGCAATAGCAGTACTCAAGGTGAAGCTAGCAAGGGAAACAAAAGCGTTGAGGATAATTTAGAGGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAATTAGGCTTGTAG 864 0.4086 MKEQGFGDKMNAITTILPLTANTFLCFANSHLHLRSLPPTCGIPTCKISYASRFHHSQWKHQKKERWGNRMMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDYSQGSQSRNAQPEEEFYGLGNFMRDVQITIEDFFKDLQEEFRNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNIADQNDDYKTPEGGNASNFSGSETPSNSSTQGEASKGNKSVEDNLEEIEATLAQLKKELGL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00403 287 SUPERFAMILY Chaperone J-domain 51 141 IPR036869 -
Spst5g00403 287 MobiDBLite consensus disorder prediction 137 160 - -
Spst5g00403 287 ProSiteProfiles dnaJ domain profile. 81 145 IPR001623 -
Spst5g00403 287 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 233 - -
Spst5g00403 287 ProSitePatterns Nt-dnaJ domain signature. 122 141 IPR018253 -
Spst5g00403 287 CDD DnaJ 82 134 IPR001623 -
Spst5g00403 287 MobiDBLite consensus disorder prediction 236 264 - -
Spst5g00403 287 Coils Coil 264 284 - -
Spst5g00403 287 FunFam Chaperone DnaJ-domain superfamily protein 78 199 - -
Spst5g00403 287 Gene3D DnaJ domain 79 198 IPR036869 -
Spst5g00403 287 SMART dnaj_3 80 137 IPR001623 -
Spst5g00403 287 PRINTS DnaJ domain signature 83 101 IPR001623 -
Spst5g00403 287 PRINTS DnaJ domain signature 101 116 IPR001623 -
Spst5g00403 287 PRINTS DnaJ domain signature 117 137 IPR001623 -
Spst5g00403 287 MobiDBLite consensus disorder prediction 229 271 - -
Spst5g00403 287 Pfam DnaJ domain 82 142 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00403 Spst-Chr5 3246834 3250368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00403 83 143 C2H2 Transcription Factor Family AT1G74250 41.791 6.06e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00403 - - gmx:100812972 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00403 5 3246834 3250368 Spst5g00403 5 3246834 3250368 ECH