Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00388 ATGAGGAAGCCAGAACTGTGTAGTGGTAAAAACAACAACAGCAAGTTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAGAAGCTGATGAACTACATGCTAAACAATGGACAAGGATGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAACGGTGTGGCAAAAGTTGTCGGCTGAGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGAGAACCGACAATGAGATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCCACGACCACAACCTCAACCTCACCAAATGCTAGCGAGACCTCATCTGAGCCATGTAAAGACCTCAACATGGGAGGGTTTATGACTACACAACATCATCAACATGCAAACTTTGTGCCTGTTTTTAGTTCATCCCCATCACAGTCAATGCAAGCCACAGTTTTCGATACTATGATTTTGCCTATGTTGGATCATGGACTAAACATGCCACACGCTGGAGGAGGGTACTTCGAAGGCCCAGGGCCATGCTTTTCTCAAAGTGAAGTTGACAACAGAATTTCTTATTTAGAAAACGGAGTGTTTGGGAGTGTAAATATTGGCGTAGAGGGGGATATGTTTGTTCCTCCCCTTGAGAATGTAAACACCAGTTTCCATGATCATAACCTGAGTAGCACGTGCAAGAGAGAAATTAACAGCAGTTACTTTGATGACATAAATAGTATCCTCAACAACTGCAACATTGACATAACTACTGAGAATAAGGGTGGGGTGGAGAACTTGTTTCAGCAAGAGTTAGCCACGGGAGAATGGGGCTTTGAGGAGATGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCATTCTGA 963 0.4351 MRKPELCSGKNNNSKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTSTSPNASETSSEPCKDLNMGGFMTTQHHQHANFVPVFSSSPSQSMQATVFDTMILPMLDHGLNMPHAGGGYFEGPGPCFSQSEVDNRISYLENGVFGSVNIGVEGDMFVPPLENVNTSFHDHNLSSTCKREINSSYFDDINSILNNCNIDITTENKGGVENLFQQELATGEWGFEEMMKDVSSFPFVDFSF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00388 320 FunFam MYB transcription factor 15 71 - -
Spst5g00388 320 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Spst5g00388 320 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Spst5g00388 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Spst5g00388 320 FunFam Transcription factor MYB46 72 145 - -
Spst5g00388 320 PANTHER MYB DOMAIN PROTEIN 55 7 229 - -
Spst5g00388 320 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Spst5g00388 320 CDD SANT 21 65 IPR001005 -
Spst5g00388 320 Gene3D - 18 70 - -
Spst5g00388 320 MobiDBLite consensus disorder prediction 122 142 - -
Spst5g00388 320 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Spst5g00388 320 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Spst5g00388 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Spst5g00388 320 SMART sant 70 118 IPR001005 -
Spst5g00388 320 SMART sant 17 67 IPR001005 -
Spst5g00388 320 CDD SANT 73 113 IPR001005 -
Spst5g00388 320 Gene3D - 72 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00388 Spst-Chr5 3183308 3185569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00388 1 253 MYB Transcription Factor Family AT5G12870 51.128 1.11e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00388 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00388 K09422 - gmx:100799410 418.313