Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00386 ATGGAGTATTCTGTGGGATCTTTGGGGAGAGATCTTGAGAACGTGAGGAAATACTACGGGAGTGGAATAACAAAGGAAGCATCATGGAGAGAATCACAGCTTAAAGGGTTGCGAAATTTTCTAGTTGAAAAAGAGGAAGAAATCTTGAGAGCCCTCAAGCATGATTTGGGAAAGCATTACGTCGAGTCTTTCAGAGATGAGGTAGGAACCTTAATAAAGACCTTAAACTTCGCCCAAAAGCATTTGAAAAAATGGATGGCGGGAGAAGAGGCTAAACTGCCAATAATAGCACTGCTTTCAAGTGCTGAGATAGTTCCTGAGCCACTTGGTCTTGTTCTCATAATCTCATCATGGAACTTCCCCTTTGGACTATCCTTGGAGCCACTAATAGGAGCAGTAGCTGCTGGAAACACCGTAGTTCTAAAGCCTTCAGAGATGTCCCCTTCTTGCTCTTCTCTCTTAGCCACTGTCCTCCCAACTTACTTGGACAGTAAGGCCATTAAGGTCGTCCAAGGTGGACCAGAAGTGGGGGAGCTACTATTACAGCAAAGATGGGACAAGATTTTCTTCACAGGAAGTGCAAAGGTGGGAAGGATTGTCATGTCTGCTGCAGCTGTGCATCTTACTCCAGTGACTTTGGAGTTGGGTGGAAAATGCCCAGCACTGGTTGATTCTCTTGCATCTTCTTGGGACAGAGAGGTGACTGTGAAGCGACTGTTGGTGGCTAAATTCGGGTCTTGTGCAGGACAAGCATGCATAGCAATCGATTATGTCCTTGTAGAGAAGAGTTTCAGTTCTACATTGGTGGCATTAATGAAGGCTTGGATTAAGAAAATGTTTGGAGAAAATCCCAAAGAGTCCAATACTATTGCAAGAATAGTTAATACCAAACATTTCATGAGACTGAAGAATCTTCTCACTGATCCAAGGGTCAAAGAGTCGGTGGTTTATGGTGGTTCAATGAACGAAAATGACTTATTTATTGAACCGACAATATTACTGGATCCACCACTTGATTCAGCAATCATGGCTGAGGAAATCTTTGGGCCAGTGCTTCCAATTATCACTCTGGAGAAAATAGAAGAAAGTGTTGAGTTCATAAGCTCAAGGCCTAAACCTTTAGCAATTTATGCCTTCACGAAAAATCAAGTTCTCCAAAGAAGATTGTTATCTGAAACATCATCCGGAAGTCTTATATTCAACGATGCAATTCTGCAGTACATAGCGGATTCCCTGCCATTTGGAGGAATTGGTGAATGTGGGTTTGGCAAGTACCATGGGAAGTTCTCCTTTGACGCTTTCAGTCACCATAAAGCTGTGGCCAGAAGAAGTTACTTGACTGATTTTTGGTACAGGTTTCCTCCATGGACTCTCAACAAGCTCCAACTACTTGAGGTGTCTTACAATTTGGACTATCTTGGAATGCTTCTGGTTCTGCTTGGCTTAAAGAAGTCAAAACGGTCACTATTTTAG 1473 0.4284 MEYSVGSLGRDLENVRKYYGSGITKEASWRESQLKGLRNFLVEKEEEILRALKHDLGKHYVESFRDEVGTLIKTLNFAQKHLKKWMAGEEAKLPIIALLSSAEIVPEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNTVVLKPSEMSPSCSSLLATVLPTYLDSKAIKVVQGGPEVGELLLQQRWDKIFFTGSAKVGRIVMSAAAVHLTPVTLELGGKCPALVDSLASSWDREVTVKRLLVAKFGSCAGQACIAIDYVLVEKSFSSTLVALMKAWIKKMFGENPKESNTIARIVNTKHFMRLKNLLTDPRVKESVVYGGSMNENDLFIEPTILLDPPLDSAIMAEEIFGPVLPIITLEKIEESVEFISSRPKPLAIYAFTKNQVLQRRLLSETSSGSLIFNDAILQYIADSLPFGGIGECGFGKYHGKFSFDAFSHHKAVARRSYLTDFWYRFPPWTLNKLQLLEVSYNLDYLGMLLVLLGLKKSKRSLF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00386 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 438 IPR016162 GO:0016491
Spst5g00386 490 FunFam Aldehyde dehydrogenase 16 220 - -
Spst5g00386 490 PIRSF ALDH 4 476 IPR012394 GO:0006081
Spst5g00386 490 FunFam Aldehyde dehydrogenase 217 420 - -
Spst5g00386 490 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491
Spst5g00386 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 420 IPR016163 GO:0016620
Spst5g00386 490 PANTHER ALDEHYDE DEHYDROGENASE 8 475 IPR012394 GO:0006081
Spst5g00386 490 Pfam Aldehyde dehydrogenase family 27 440 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00386 Spst-Chr5 3172401 3175187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00386 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 53.719 0.0 566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00386 5 3172401 3175187 Spst5g00386 5 3172401 3175187 ECH
Spst5g00386 5 3172401 3175187 Spst2g02360 2 23128461 23131239 PCT