Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00385 ATGGCTGCAACTCCTTCCAAATCCTTTCAAACTCCCTCCACATCTAAACTGCGATCGCAATCCAATTCTAAATCATCGCCAGCTGTAAACCCCAACACTCCGCAAACCCTACATCTTCGCAGATCCGCTCGCGCCAAGTCCCTCCATTTCGATACTCCCCAATCTCCCCACGCAACTCGTGAAGTCTCCCTCACAACTTCGAAGCGGAGGACTCGACGATCCATCGATTATGTCAAGGAGGATTCTTGCGAAGTCAAAGTCGCTACTTGGCAAAATTTAGCTAAAAAGAACGGTTCAGTTGTCGATGCCTCGAACAAGAAGAAGAATAGGAAGGGCTCCAGTGAAGCTGCGTTTGCTCCGGTGACGCCAGCTTCGTTGGAGAAGACCTCAAAGAGAAAGAGGGAAGGTGAAGGGAGTGTTGTTACCAGAGCTAAAAGAGGGAAATTGGAGAATCGGAAACAGAGTTCAAAATTGCCTGCGAGGCGCGTTTATTACAAAAAGGTGATCTTCGATGGGGGAGAGTTTGAGGTGGGGAATAATGTCTACGTTAAGAGGAGAGAAGATGCTGCCTCTGATAATGAAGATCCCGAATTTGAGGAGTGTAAGATGTGTTTTTTGACAAACGAGGAAGTCATGATTGAGTGTGACGATTGTTTGAATGGGTTTCATTTGAAATGCTTGAGGCCTCCGTTAAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGGATGGGTAAGGAGGTTCAGCTTCCAAAGCCTCCTGCGGGTAAGAAAGTGGTTAGAACTATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCATATTGAAAGCATATGGAAAGAGGTGGATGACAACTACTGGTGTCGGGTGCGGTGGTATACAATTCCGGAAGAGACTTCTGTTGGGAGGCAACCACATAACCTGAGAAGGGAGTTATACCGAACTAATGACTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTATGTCATGATCCCCAAAGAATATGCTAAAGCGAACAATATGGGAGATGATGTTTTCTTATGTGAATATGAATATGACATCAATTGGCATAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAAACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACCCTGATACAGATGAAGATTTTGGATATGAAGGAGAAAATATTAAGGATGGAAAATGCCAGCCATCGAAAGGCCATCACTTAGCTGCAAATCTACACAAGGGACGGTTCTTTGGACTACAGAAGATAGGCACAAAAAGAATTCCACAGCATGTAAGGTCTCACAAACATACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCGTCCCTGCCTAAATCTCTACCATGTAGAAATAAAGAAATGGAAGAGATAACTACATTCATCAAAGGTGCTATTTCTGACGATCAATGTCTTGGGGGTTGCCTCTACATTCACGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAAGTCTGAAGTTGATGCAGGAAACATCAAACCATACACTTTTGTGGAGATTAATGGTCTGAAGTTGGCATCACCAGATAATATTTATAGGGTCATATACGAGGCACTGAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAGAACCGGAGATGAGGCTGATCGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATTGTCATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTACTTCCTCGAATATCAAGCCGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTATCATCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCAGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCCGACGTGCAGCTGAAATTGCAGATTATCGAATGAAGAAGTTAATTTCTAATCCTGATTTTGTTACTCCAGGAAAGGGTCTTGTTGGAATGGTGGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGACTAAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACGGGAATGGGCGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATCCCTCTGTGTCAGCAACGCAGAAGTTTTTCCTGGATATGATACTCTCTTGCAAGTTGGCTGTAAGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAACACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTGGCCTTTGCGCTGAGAGACAGCAAAGATCTACCTTGGCTGTCAAAGTATCTCATGTAG 2565 0.432 MAATPSKSFQTPSTSKLRSQSNSKSSPAVNPNTPQTLHLRRSARAKSLHFDTPQSPHATREVSLTTSKRRTRRSIDYVKEDSCEVKVATWQNLAKKNGSVVDASNKKKNRKGSSEAAFAPVTPASLEKTSKRKREGEGSVVTRAKRGKLENRKQSSKLPARRVYYKKVIFDGGEFEVGNNVYVKRREDAASDNEDPEFEECKMCFLTNEEVMIECDDCLNGFHLKCLRPPLKDVPEGDWICGFCEARRMGKEVQLPKPPAGKKVVRTMREKLLSSDLWAAHIESIWKEVDDNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCYVMIPKEYAKANNMGDDVFLCEYEYDINWHSFKRLADIDNERENGEETDSDEDWNVDKESDPDTDEDFGYEGENIKDGKCQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKHTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGGCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPDNIYRVIYEALNGHRVSWKKALHLLNERFVEGKRTGDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYHQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDFVTPGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSSLCVSNAEVFPGYDTLLQVGCKLGECRIILCEAGAKHKLQKLQLNFPSDDVAFALRDSKDLPWLSKYLM 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00385 854 MobiDBLite consensus disorder prediction 1 69 - -
Spst5g00385 854 FunFam Origin recognition complex subunit 1 264 456 - -
Spst5g00385 854 ProSitePatterns Zinc finger PHD-type signature. 201 244 IPR019786 -
Spst5g00385 854 Pfam PHD-finger 201 246 IPR019787 -
Spst5g00385 854 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Spst5g00385 854 SMART PHD_3 200 245 IPR001965 -
Spst5g00385 854 MobiDBLite consensus disorder prediction 379 402 - -
Spst5g00385 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 716 IPR027417 -
Spst5g00385 854 Gene3D - 265 429 IPR043151 -
Spst5g00385 854 MobiDBLite consensus disorder prediction 48 62 - -
Spst5g00385 854 Gene3D - 650 737 - -
Spst5g00385 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 255 IPR013083 -
Spst5g00385 854 ProSiteProfiles Zinc finger PHD-type profile. 198 247 IPR019787 -
Spst5g00385 854 MobiDBLite consensus disorder prediction 101 155 - -
Spst5g00385 854 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 305 849 - -
Spst5g00385 854 FunFam Origin recognition complex subunit 1 650 742 - -
Spst5g00385 854 Pfam ATPase family associated with various cellular activities (AAA) 502 647 IPR003959 GO:0005524|GO:0016887
Spst5g00385 854 SMART AAA_5 497 651 IPR003593 GO:0016887
Spst5g00385 854 Pfam BAH domain 281 371 IPR001025 GO:0003682
Spst5g00385 854 ProSiteProfiles BAH domain profile. 256 373 IPR001025 GO:0003682
Spst5g00385 854 Gene3D - 453 649 IPR027417 -
Spst5g00385 854 Pfam AAA lid domain 675 708 IPR041083 -
Spst5g00385 854 SMART BAH_4 232 373 IPR001025 GO:0003682
Spst5g00385 854 MobiDBLite consensus disorder prediction 127 155 - -
Spst5g00385 854 FunFam Origin recognition complex subunit 1 196 263 - -
Spst5g00385 854 FunFam Origin recognition complex subunit 1 454 653 - -
Spst5g00385 854 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00385 3 853 Core DNA Replication Machinery Family AT4G14700 60.557 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst5g00385 AAA 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00385 K02603 - gmx:100798547 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00385 5 3164959 3170819 Spst5g00385 5 3164959 3170819 ECH