Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00384 ATGGCGGCGGCGACGGCGTCGCAGGGGTACCACCAACCTGCGACAATCGAGGAAGTCCGAACCCTATGGATTGGGGATTTGCAGTACTGGGTGGACGAGGCGTACCTCAGCCACTGCTTCGCCCACACCGGCGAGGTTCTCTCCATCAAAATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGCGGCAGCGGAGCGCGTGCTTCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAGACCTTCAGGCTTAATTGGGCTTCCTTCGGCATCGGCGAGCGCAGGCCTGATGCGGGCCCAGAACATTCCATCTTCGTGGGCGATCTTGCGCCCGACGTAACCGATTATCTTCTCCAAGAAACCTTCCGGGTCCACTACCCCTCCGTTCGCGGGGCCAAGGTCGTCACGGATCCCAACACGGGCCGTTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAGCGAACGCAACCGCTCCATGACCGAGATGAACGGCGTTTATTGCTCCAGCAGGGCCATGCGCATTAGCGCCGCCACGCCGAAGAAGACCACCGCTGGTTACGCCGCGCCCGCGCCGGGGCCCAAACCGCTGTACCAGATTCCGGCGTACACTGCCCCGGTTCAGGCCCAACAACCGGAGTATGATGTGAATAACACTACCATTTTTGTTGGAAATTTGGACTTTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTTCAAATTGGGGAAATTGTCTCTGTCAAAATTCAGCCTGGCAAGGGATGTGGCTTTATTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCAATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTTAGGATTTCATGGGGTAGAACCCTATCTAGACAGGACGTAACTGGTGGATGGGGACAACAGATGGATCCAAGTCAATGGAATGGATACTATGGGTATGGGCAGGGTTATGAAGGATATGCGTATGGGTCTGCTCAAGATCCTTCATTGTATGCATATGGTGCATATGCTGGCTATGCGCAATACCCCCAACAGGTTGAAGGTGGTCAAGACCAATCGGGTATGTCAGTGGGTGGCATGGAACAAAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGACAAGTTAAATGATGCGTACGTCTCAGTACATGGAAATGCCATTTTAGGGCGATCGCTATGGCAAAAATCCCGTTCCTCATCCTTACACCAAACTTAA 1269 0.5327 MAAATASQGYHQPATIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRSMTEMNGVYCSSRAMRISAATPKKTTAGYAAPAPGPKPLYQIPAYTAPVQAQQPEYDVNNTTIFVGNLDFNVSEEELKQNFLQIGEIVSVKIQPGKGCGFIQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLSRQDVTGGWGQQMDPSQWNGYYGYGQGYEGYAYGSAQDPSLYAYGAYAGYAQYPQQVEGGQDQSGMSVGGMEQREELYDPLAMPDVDKLNDAYVSVHGNAILGRSLWQKSRSSSLHQT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00384 422 FunFam Polyadenylate-binding protein RBP47B 19 99 - -
Spst5g00384 422 Gene3D - 19 99 IPR012677 -
Spst5g00384 422 CDD RRM2_SECp43_like 112 191 - -
Spst5g00384 422 FunFam Polyadenylate-binding protein RBP47B 101 201 - -
Spst5g00384 422 Gene3D - 215 308 IPR012677 -
Spst5g00384 422 SUPERFAMILY RNA-binding domain, RBD 210 329 IPR035979 GO:0003676
Spst5g00384 422 CDD RRM1_SECp43_like 21 101 - -
Spst5g00384 422 Gene3D - 101 202 IPR012677 -
Spst5g00384 422 SUPERFAMILY RNA-binding domain, RBD 19 193 IPR035979 GO:0003676
Spst5g00384 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 100 IPR000504 GO:0003723
Spst5g00384 422 SMART rrm1_1 232 299 IPR000504 GO:0003723
Spst5g00384 422 SMART rrm1_1 21 96 IPR000504 GO:0003723
Spst5g00384 422 SMART rrm1_1 114 188 IPR000504 GO:0003723
Spst5g00384 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 303 IPR000504 GO:0003723
Spst5g00384 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 184 IPR000504 GO:0003723
Spst5g00384 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Spst5g00384 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 296 IPR000504 GO:0003723
Spst5g00384 422 FunFam polyadenylate-binding protein RBP45 214 310 - -
Spst5g00384 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 192 IPR000504 GO:0003723
Spst5g00384 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 13 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00384 Spst-Chr5 3159929 3162407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00384 114 298 Eukaryotic Initiation Factors Gene Family AT1G49760 27.604 5.36e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00384 - - gmx:100799421 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00384 5 3159929 3162407 Spst5g00384 5 3159929 3162407 ECH
Spst5g00384 5 3159929 3162407 Spst2g02361 2 23135022 23138092 PCT