Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00380 ATGCAGGTGATCATGATCTATCTAACGGAGTTGGCGTGTTCCCTCAAGAGATTACTTGTCTGGCGGATAGAATTCAAGATGAGTTGGGACCCCCACATGGAGGTCCGTTACGACAACATCAGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCACAGGAGAGTGCATACCCTTCAGGTTCAACTACAAACTTCTACAAACCTGGGCTATCTGAACCAGCGAGTACCTTATACTGTCAGGATAGTAATGGTTATGAGGTGAATTATCATGAACGATTGATCGATGAGTATAGAAGGCCGTCGGAAAACTCGGCAACAATCAATGAACAGATGGCAACAGTATGTATAGAAAGGGAAGGTGTAAACAATTCCACGCTAGACAGTTCTATTGAATGCCCACGAAGGCATCATAATGACTCCAATGATTATGAGGACATTTGGGAAGACAACATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGGCAGTTGGAATTCAGAGTCGCGGGCTCTCCCAAGAGCAAATCTCATCGATTCCAGTATCAAAGTACAAGTGTGGCCGCTTCTTCTTCTTCTTCTTCAGGAAGAAGTCTCGCGATGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTCTACCATGCAAACATGTCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCAAGTTGTTTAGAAATAATATCCTCCGAGTGCGTAGTAGACTCTGAACTTCAGAAACTGTCAAAGCAGCTTGTCCTATGTGTTACAGGGAGTTTTGGTTTTGACATAGAAATGGAAGCTGCAGCGAGGATTTGTTTTATTGCAAAGGCCGGATTATGTGCTCTAATTTCACCAATTTAG 966 0.4286 MQVIMIYLTELACSLKRLLVWRIEFKMSWDPHMEVRYDNISYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESAYPSGSTTNFYKPGLSEPASTLYCQDSNGYEVNYHERLIDEYRRPSENSATINEQMATVCIEREGVNNSTLDSSIECPRRHHNDSNDYEDIWEDNIDPDNMTYEELLELGEAVGIQSRGLSQEQISSIPVSKYKCGRFFFFFFRKKSRDERCVICQMEYRRGDKRMTLPCKHVYHASCGNKWLSINKASCLEIISSECVVDSELQKLSKQLVLCVTGSFGFDIEMEAAARICFIAKAGLCALISPI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00380 321 FunFam E3 ubiquitin ligase BIG BROTHER 185 274 - -
Spst5g00380 321 Pfam RING-like zinc finger 227 253 IPR001841 -
Spst5g00380 321 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 266 IPR033276 GO:0004842|GO:0016567|GO:0046621
Spst5g00380 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 273 IPR013083 -
Spst5g00380 321 ProSiteProfiles Zinc finger RING-type profile. 227 265 IPR001841 -
Spst5g00380 321 SUPERFAMILY RING/U-box 222 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00380 Spst-Chr5 3120192 3124434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00380 31 262 C3H Transcription Factor Family AT3G63530 37.553 5.33e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00380 K19045 - gmx:100805963 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00380 5 3120192 3124434 Spst5g00380 5 3120192 3124434 ECH
Spst5g00380 5 3120192 3124434 Spst2g02366 2 23213230 23215950 PCT