Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00375 ATGACTCACCCCTACTGCTCCAATGATTTCAATGCTTGGTTTGACCTCAATTCTCCATTCCTTTTCTCCTCTTCTTCGTCACCATGCTCCAACCCTCCATTCTATCTTCCCTCTACTTATGATAACTTCACCACTGCCATCTCTTTTACTCATCATCAATCTTCTCCCCCCAAAGAAGCACTTCCTCTCCTTAACCTAAGCCCTGCAAGAGGTGAAGATCTTGAATCTTCCTTTAGTGCCATGAAAGTCAACAGAGAGAAAGAGAGAGAACTAAGCATATCTTCTAATAATATCTCCTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCAGTACCACTTCACCTGATTTAACTTCAAACACATACTCAGATAAAGAAAAAGCCACGGTTGCTCGTGAGTATTCTCCTCCTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAATCTCTGAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTACTGTTGTGCACCTGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTCAGGACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTATGGTATTGTTCTTGTGGGTCTGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCCTTTGGGAGTGGCCATAAAGCTTATGGACTCGACTCTCTTGATCAAGACGATGAACCTGGCTCTGAAATTGACCACGAAAATGTCAATGAATCTTTAGTTTCAAGTCATTGTTGA 996 0.4347 MTHPYCSNDFNAWFDLNSPFLFSSSSSPCSNPPFYLPSTYDNFTTAISFTHHQSSPPKEALPLLNLSPARGEDLESSFSAMKVNREKERELSISSNNISLDDETVTVALHLGLPSSTTSPDLTSNTYSDKEKATVAREYSPPRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGSGHKAYGLDSLDQDDEPGSEIDHENVNESLVSSHC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00375 331 Gene3D Classic Zinc Finger 245 323 - -
Spst5g00375 331 FunFam Zinc finger protein WIP2 217 299 - -
Spst5g00375 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Spst5g00375 331 PANTHER ZINC FINGER PROTEIN WIP2 34 320 IPR043584 GO:0003700|GO:0010468
Spst5g00375 331 Gene3D Classic Zinc Finger 163 186 - -
Spst5g00375 331 SUPERFAMILY beta-beta-alpha zinc fingers 230 268 IPR036236 -
Spst5g00375 331 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00375 Spst-Chr5 3093729 3095718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00375 1 328 C2H2 Transcription Factor Family AT3G57670 55.181 4.71e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00375 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00375 - - vum:124825208 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00375 5 3093729 3095718 Spst5g00375 5 3093729 3095718 ECH
Spst1g03359 1 42200927 42203326 Spst5g00375 5 3093729 3095718 ECH
Spst7g00294 7 2291385 2293602 Spst5g00375 5 3093729 3095718 ECH
Spst5g00375 5 3093729 3095718 Spst2g02367 2 23226483 23228649 PCT