Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00372 ATGGCAGAGGAACTTGACCTGGACAACGTGAAGGCAGTGAAAGTGTTAGGCAAAGGAGCCATGGGCACTGTGTTTCTTGTGCAACACAACTCCTGCCACGTGGCAGTCAAAGTCGTCGACAAATCATCGTCCCTGCACGACGCTTCTCGCCGTGGTCACTGGGAAATCAGCGTTCTCTCTCGCTTGTCCCACCCCTTCCTCCCCACCCTATTGGGCTCCTTTGAGTCTAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCCGGCGGCGACCTCAACCTCCTCCGCTACCGCCAAACCGATCACGTCTTCTCCCCCGCCGTCATCCGCTTCTACCTCGCCGAGATCCTCTGCGCCCTCCACCACCTTCACTCCATGGACATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAAGAATCCGGCCACGTCACCCTCACCGACTTCGACCTCTCCCGAACCCTCTCTCCCACCAAAACCACCACCTCTCCTTCCAACTCTCACATTCCCGACACAGCTCCGCGCAAGCCCCGCCGCAACTTCCGCTGGGGCCCTCTCACCAAGGCCCCCAAGTCCGCCCGAGTCACCCCCGCAGCTCGCCGCGCCGCGCCGAGCTTTGAGCGCTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTCGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGCTCTACGGAACGACACCGTTCAAGGGGAAGAATCGCAAGGAAACGTTTCGCAACGCGTTGTTGAAGACGCCCGAGTTTGTCGGGAAGAAAACGGCGTTGACGGACCTCATCTCACGGTTGCTCGAAAAGGACCCCACCAAACGTTTGGGTTATGTTCGTGGCGCTAACGAGATCAAGGAGCACGAGTTCTTCATAGGGGTTAAGTGGGACCTACTAACGGAGGTTATGCGGCCGCCGTTTATTCCGTCAAGAGACGACGGGACAACGCCTTTCGCCGATGGAGTCGACATCAGGGGATACTTTCAGAGCTTGAAATCTCCGCCGTCTTTGCCCCCTTCGCCGTTACCGTCACCGTCGTTTGAGTTTCAGTATAATATTTCCTAA 1125 0.5911 MAEELDLDNVKAVKVLGKGAMGTVFLVQHNSCHVAVKVVDKSSSLHDASRRGHWEISVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNLLRYRQTDHVFSPAVIRFYLAEILCALHHLHSMDIAYRDLKPENVLIQESGHVTLTDFDLSRTLSPTKTTTSPSNSHIPDTAPRKPRRNFRWGPLTKAPKSARVTPAARRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMLYGTTPFKGKNRKETFRNALLKTPEFVGKKTALTDLISRLLEKDPTKRLGYVRGANEIKEHEFFIGVKWDLLTEVMRPPFIPSRDDGTTPFADGVDIRGYFQSLKSPPSLPPSPLPSPSFEFQYNIS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00372 374 FunFam Serine/threonine-protein kinase OXI1 91 159 - -
Spst5g00372 374 SUPERFAMILY Protein kinase-like (PK-like) 6 364 IPR011009 -
Spst5g00372 374 MobiDBLite consensus disorder prediction 157 187 - -
Spst5g00372 374 MobiDBLite consensus disorder prediction 157 172 - -
Spst5g00372 374 Gene3D Transferase(Phosphotransferase) domain 1 209 330 - -
Spst5g00372 374 SMART serkin_6 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00372 374 Pfam Protein kinase domain 211 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00372 374 Pfam Protein kinase domain 12 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00372 374 ProSiteProfiles Protein kinase domain profile. 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00372 374 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Spst5g00372 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Spst5g00372 374 PANTHER FLIPPASE KINASE 1-RELATED 4 331 - -
Spst5g00372 374 Gene3D Transferase(Phosphotransferase) domain 1 91 165 - -
Spst5g00372 374 Gene3D Phosphorylase Kinase; domain 1 11 90 - -
Spst5g00372 374 FunFam Serine/threonine-protein kinase OXI1 209 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00372 Spst-Chr5 3076552 3077676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00372 3 365 AGC Kinase Gene Family AT3G20830 59.079 4.27e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Spst5g00372 Pkinase 7.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00372 - K08286 gmx:100802613 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00372 5 3076552 3077676 Spst5g00372 5 3076552 3077676 ECH
Spst5g00372 5 3076552 3077676 Spst2g02375 2 23353045 23354298 PCT