Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00340 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTCCATGCTGCAAACAAGCTAGCTAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAACCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCCACTGGTATCCGAGTGGCCTCAAGTTCTAATTGCACCAAAGACAATGAAAATGTTCACTTGGAGCCTCCTAATAGGAATGCACAACAAGTTTCCACGAAAATTGCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGAATTGACAGGCTTTGAATCACCAGAGAAAGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGAGGGTATTTTTGGTGAACAATTTACTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTCATAATAGCAGCACTGTTGCCTCATACAGAACCTCCAAGTCCTACATCTCACACAAAAAGCCTAGGATTGAAGCCGTAAATGATGATGATGATGATGATGAGTACTTTACTGTGCCTGATCTTGGCTAA 723 0.4398 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNENVHLEPPNRNAQQVSTKIASQQVPSFTSSWAVDDLLELTGFESPEKESLQFGELEWLTDEGIFGEQFTQEALAAAEVPQLPVTHNSSTVASYRTSKSYISHKKPRIEAVNDDDDDDEYFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00340 240 Gene3D Classic Zinc Finger 1 91 - -
Spst5g00340 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst5g00340 240 CDD Bbox1_BBX-like 5 47 - -
Spst5g00340 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Spst5g00340 240 MobiDBLite consensus disorder prediction 220 240 - -
Spst5g00340 240 MobiDBLite consensus disorder prediction 225 240 - -
Spst5g00340 240 CDD Bbox1_BBX-like 57 98 - -
Spst5g00340 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Spst5g00340 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Spst5g00340 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Spst5g00340 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Spst5g00340 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00340 Spst-Chr5 2843645 2845445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00340 1 166 Orphan Transcription Factor Family AT1G06040 62.428 2.41e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst5g00340 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00340 - - vun:114183169 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00340 5 2843645 2845445 Spst5g00340 5 2843645 2845445 ECH
Spst5g00340 5 2843645 2845445 Spst2g02426 2 23943291 23944381 PCT