Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00333 ATGCTGCCTCCTACCAAATCCGTCGAAAGCGAGGAGTGGGGAACCCCCACCAGCAACCTCTGGATTGGAAATCTGCCGCCGGAGGTTGCCGATTCCGATCTCATGGACCTCTTTGCTCCCTACGGTTCTCTCGACACACAAATATCCTATTCCTCACGCACCTTCGCTTTCGTCTTGTTCCGACGCGTCGAAGACGCTAAGGCCGCGAAAACCAACTTACAAGGCGCGTCGCTGCGCGGGTATCAAATCAGAATCGAATTTGCAATACCGGCAAGGCCGAGTAAACAGTTATGGGTGGGTGGTGTTAGCCACGCTGTCGCGATGGAGGATTTGGAAGCGGAATTTCGTAAATTCGGGAAGATTGAGGATTTTAAGTTCTTCAGAGACCGCCGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTTTGCGGGCCATGAAAGTCATGAACGGGAAGCGACTAGGTGGGGGCTATATTTGTGTGGACTTCCTTAGGTCACAATCTACGAATAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCATTGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAGGAGTTTTCCTTCTAGACATTATTCATTTGTAGAGTTTAGAAGCATAGATGAAGCTCGTCGTGCCAAAGAGGGCCTTCAAGGACGACTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATCTGACACCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGGCCTTTACCTGATGGATTAGTTAGTGAGCATCCATTTCGACCACCACAATCAGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCTGGGCAATTGCCATCCGGTGGTATTGGTGGACCTAATGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAATCTCTTAACTCTGGTCCTGATTTTAATGAGTTGGGCACACTTCACAAATTTCAAGATGGTAGCTCTAAAAGTCAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGATTTCTTCTCCTATGCCTGGTATTAGGCCCACCTCTGGTCCATGGGATGTACTTGACACAAACCAATTTTCAAGAGATTCTAAACGTTCAAGGATAGATGATGCTTTGCTCACCAGTGATGCCCCATTTCCTTTAAGAAATATTAATGACCATGGATTAAGATTAGAACAACCATTTGGCATTGATCCAATTACTGATGGAGATGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGCTCGTGCTAGGATCACATCTGGAGTACCTAGTTCTGTCCAACCTGATATTGATCATACATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCAAGATGTGTGCCTATTGGAAAAGGGATAGGGACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTGGAGATGTTGACGAAACACTATGCTGATGCAATTGGCTTTGACATTGTTTTCTTTCTCCCTGATAGTGAAGAAGATTTTGCTTCATACACTGAATTCCTTCGATACCTTAAAGCAAAAAACCGTGCTGGTGTTGCTAAGTTTCTTGATAATACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGGTTATATGGTGTGATTCTTAAATTTCCGTTAGTTTCAAGTAGCTCATCTATGCAACAAACAATGCATTTTCCTTCTCCCTCTACCCAGTATGTGCAACAGATTCCCCCTTCACAACCCGAGTATGGTTCAATCTCTGTAAAGGAGGAACAGATTTTACCAATGGAATATAACAGACTGTTGCATGATGATTCTAAGCGTCTGTCAAAACCACTTCCTCCAGCTACCAGTGTCCCTCCTCCAGCTCATTCTGTTCCTCCTGATTATGCTTCTACTTATACAGCTTCTGCATCCCAAACTGGAGTTACATTGACACCTGAACTTATTGCAACTTTAACTTCTTTTCTCCCTTCAACTATACAAGCACAATCAGCTGGTGGTACAATGACAGTGGTTGGTCCCTCTACTGTGAAGCCACCTTTTCCATCTGTTGCATCTAATGCTGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTGCAGATCCACCAAGTTATCCTCCTCAACAGTTTGGGAGTATTCATAATGCTCAATATCAACCTTACCCACCTGCATCGTCTAGTGAGCACCCTGCTCAAGTTGTCTCAGGCAGTTCCCATTTCCATGATGCTGCTTCAAGTCTTCAGCAGCTAGGTGCTGTTTCGTCGTCTACACCTGTGACTAATTTCATTGTACCTCCTCAAAATGGACAGGTAGCTGTTCCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTCTCCCACAGCACTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATGCTTCTGTTCTATATGGTTCTGAGGCATTCCAACAACCTAATAATTTTATTCCCTCATCCAACCAAGTTTCCAGTGCTGCTTCACAGCAGCATTTGAATTCAGAGCCCCCAAATCAACAACTTCAACCTGCTTTAAGTGGAGGTGGTCAGGGAATGTCAGAATTGGATGCTGATAAGAACCAGAGGTACCAGTCAACACTGCAGTTTGCTGCCAACCTTCTCTTCCAGATACAGCAACAACAAACACAAGGAGGACACGGCTCAGGAAATCAACAATAG 2853 0.4427 MLPPTKSVESEEWGTPTSNLWIGNLPPEVADSDLMDLFAPYGSLDTQISYSSRTFAFVLFRRVEDAKAAKTNLQGASLRGYQIRIEFAIPARPSKQLWVGGVSHAVAMEDLEAEFRKFGKIEDFKFFRDRRTACVEFLNLDDALRAMKVMNGKRLGGGYICVDFLRSQSTNRDFLVDHGQFQARPQHLQPSLGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIRSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDLTPGKDYPGFYPGSKGPLPDGLVSEHPFRPPQSDVFGQNRPIVPNNFPGQLPSGGIGGPNVPMRPFVPQGLESLNSGPDFNELGTLHKFQDGSSKSQMGPSWKRPSPPAPGMISSPMPGIRPTSGPWDVLDTNQFSRDSKRSRIDDALLTSDAPFPLRNINDHGLRLEQPFGIDPITDGDGSGPKSHLGPARARITSGVPSSVQPDIDHTWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLEMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFLDNTTLFLVPPSDFLTKVLKVTGPERLYGVILKFPLVSSSSSMQQTMHFPSPSTQYVQQIPPSQPEYGSISVKEEQILPMEYNRLLHDDSKRLSKPLPPATSVPPPAHSVPPDYASTYTASASQTGVTLTPELIATLTSFLPSTIQAQSAGGTMTVVGPSTVKPPFPSVASNAGNQSHLWKQDQQTADPPSYPPQQFGSIHNAQYQPYPPASSSEHPAQVVSGSSHFHDAASSLQQLGAVSSSTPVTNFIVPPQNGQVAVPPQVSQQYQVEVSHSTEKGYGVVQGTDASVLYGSEAFQQPNNFIPSSNQVSSAASQQHLNSEPPNQQLQPALSGGGQGMSELDADKNQRYQSTLQFAANLLFQIQQQQTQGGHGSGNQQ 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00333 950 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Spst5g00333 950 CDD RRM_SF 97 163 - -
Spst5g00333 950 Gene3D - 93 173 IPR012677 -
Spst5g00333 950 Pfam SPOC domain 479 596 IPR012921 -
Spst5g00333 950 MobiDBLite consensus disorder prediction 736 798 - -
Spst5g00333 950 Gene3D - 4 92 IPR012677 -
Spst5g00333 950 MobiDBLite consensus disorder prediction 873 914 - -
Spst5g00333 950 MobiDBLite consensus disorder prediction 364 385 - -
Spst5g00333 950 CDD RRM_SF 20 86 - -
Spst5g00333 950 FunFam Flowering time control protein FPA 10 92 - -
Spst5g00333 950 CDD SPOC_FPA-like 485 604 - -
Spst5g00333 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Spst5g00333 950 MobiDBLite consensus disorder prediction 661 687 - -
Spst5g00333 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Spst5g00333 950 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 103 - -
Spst5g00333 950 FunFam Flowering time control protein FPA isoform A 93 193 - -
Spst5g00333 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Spst5g00333 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Spst5g00333 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Spst5g00333 950 SUPERFAMILY RNA-binding domain, RBD 185 274 IPR035979 GO:0003676
Spst5g00333 950 FunFam flowering time control protein FPA 194 286 - -
Spst5g00333 950 SMART rrm1_1 201 269 IPR000504 GO:0003723
Spst5g00333 950 SMART rrm1_1 19 86 IPR000504 GO:0003723
Spst5g00333 950 SMART rrm1_1 96 163 IPR000504 GO:0003723
Spst5g00333 950 MobiDBLite consensus disorder prediction 727 798 - -
Spst5g00333 950 Gene3D - 191 277 IPR012677 -
Spst5g00333 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Spst5g00333 950 CDD RRM_SF 202 269 - -
Spst5g00333 950 MobiDBLite consensus disorder prediction 873 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00333 Spst-Chr5 2772589 2777086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00333 18 263 Eukaryotic Initiation Factors Gene Family AT4G34110 25.092 7.15e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00333 - - gmx:100806555 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00333 5 2772589 2777086 Spst5g00333 5 2772589 2777086 ECH
Spst5g00333 5 2772589 2777086 Spst2g02434 2 23977918 23984789 PCT