Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00329 ATGCCGAAGCAGATTCATGAGATTAAAGACTTCCTCCTCACTGCGAGGAGGAAGGATGCACGTTCTGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTCAAGGTTCGTTGCTCCAAGTACCTGTACACCCTCTGTGTGTTTGACTCTGAGAAGGCTGATAAGTTGAAACAATCACTTCCTCCAGTGACTCAACTCGATGACGACATTCCCAATCCGACGCCACCAATCACCAAACAAATTTATTATCCATAA 255 0.4471 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVTQLDDDIPNPTPPITKQIYYP 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00329 84 Pfam Ribosomal L38e protein family 2 65 IPR002675 GO:0003735|GO:0005840|GO:0006412
Spst5g00329 84 Gene3D - 1 68 IPR038464 -
Spst5g00329 84 PANTHER 60S RIBOSOMAL PROTEIN L38 1 66 IPR002675 GO:0003735|GO:0005840|GO:0006412
Spst5g00329 84 MobiDBLite consensus disorder prediction 62 84 - -
Spst5g00329 84 FunFam 60S ribosomal protein L38 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00329 Spst-Chr5 2753124 2757775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00329 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 88.235 4.61e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00329 K02923 - csin:114310042 127.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00329 5 2753124 2757775 Spst5g00329 5 2753124 2757775 ECH