Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00328 ATGCACATAAGTCCTTACACTACTACTCCAAAGAAGCCATCACCATACTCCACCATCCACTCCAATAACCACCGCCATCACCACCACCATAACAACAATATTGTGGATGAAGCTGCAGTGTTAGATAACAACAACATGCATCGCAGCAACCAGAGCCACACGTCCACCAGTCGTTCTTCAGACTCCAGTGAGCCGAGTGAAGATGGGAAATGGGCTCCAAAGCTTCTGAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCAACGAAAACACACCATCTTTTGTGGATGCTTAACGAGCTCGCTTCGCCCTATGGTGACTGCGATCAAAAACTCTCTTCATACTTCTTGCAGGCCTTGTTCTGCAGAGCCACTGAGTCCGGTGAGAGATGCTACAAGACACTCTCCTCCGTGGCTGAGAAGAACCACTCGTTCGATTCCGCGAGGAGGTTGATTCTCAAGTTTCAAGAGGTGAGCCCTTGGACCACGTTCGGACATGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCCAAACTCCACATCATCGACCTCAGCAACACGCTTTGCACACAGTGGCCTACTTTGTTGGAAGCTTTGGCCACGCGAAACGACGAAACGCCACACCTCAAACTCACAGTGGTGGCGCTTGCGGGGTCGCTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCAAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATCAGTGGCTTCAGGGAGCTCACAAAAGAAGGTTTAGGGGTTCAGGAAGATGAAGCTATCGCCGTGAATTGCGTTGGGGCATTGAGAAGAGTGGAGGTTGAAGAGAGGGAAAACTTGATTCGCGTGTTCAAGTCTCTTGGTCCTAAAGTGGTGACCGTTGTTGAGGAAGAAGCTGACTTTTGCAACTCGAGGGAGGATTTTGTGAATTGCTTCGAGGAGTGTCTCAAGTTCTACACTCTCTACTTCGAGATGCTGGAAGAGAGTTTTCCCCCGACGAGTAACGAGAGGTTGATGCTGGAGAGGGAGTGTTCGAGGAGCATAGTCAGGGTTTTGGCATGCTGTGGTGGTGGTGGTGAGGAATTAGAAGATGATGAGTTTGACAGTTGTGAGAGGAGGGAGAGAGGCACACAGTGGTGTGAGAGGCTGAGGAATGTGTTTTCGCCGGTTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTTAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAAGGTGATGAACATCTCTCAGGCATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCTTCAGCATGGAAACCCTAG 1347 0.5056 MHISPYTTTPKKPSPYSTIHSNNHRHHHHHNNNIVDEAAVLDNNNMHRSNQSHTSTSRSSDSSEPSEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLSSYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSLMKEVGQRMEKFARLMGVPFEFNVISGFRELTKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCNSREDFVNCFEECLKFYTLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGGGGEELEDDEFDSCERRERGTQWCERLRNVFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDEHLSGIYLTWKEEPVVWASAWKP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00328 448 ProSiteProfiles GRAS family profile. 63 447 IPR005202 -
Spst5g00328 448 MobiDBLite consensus disorder prediction 1 20 - -
Spst5g00328 448 MobiDBLite consensus disorder prediction 1 29 - -
Spst5g00328 448 Pfam GRAS domain family 74 447 IPR005202 -
Spst5g00328 448 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 437 IPR005202 -
Spst5g00328 448 MobiDBLite consensus disorder prediction 46 62 - -
Spst5g00328 448 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00328 Spst-Chr5 2747691 2749037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00328 28 448 GRAS Transcription Factor Family AT4G37650 48.565 7.54e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g00328 GRAS 2.4e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00328 - - gmx:100818806 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02154 4 62306090 62307715 Spst5g00328 5 2747691 2749037 PCT