Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00318 ATGGAATACCCTTTTTCTTCCAAGGAGAGAGATATTGGGGATTGGCAATCTTCTGGAACTCAGTTGGTGGGATCAGCATCATTAGAGGACAGAATGAGCAATTTAATATCAGAGGATATGCCCAATAGCTTCTCTGAGCTCATGAACTTTGATAGTTATGCTGGTTTGTGCAACAACCCATCCATATCGGATCAGATTTTGGCTAATCAGCTTCCGTCATTTGGCTCATTATCATATTCGTCGCCTGATGGATTCGATCTCATCCAACAGAACAGTGGGCAATGCTATATGTCAGGAGTTGGCAGAAATAACAATGATATGGAAAGTTCCGCCATTTATGGGGAGAAAGTTGTGTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAATGATGCAAATGAAGCAAATAATTTAAATTCTAAGCTAAAAATTAACGGCTCTTCTCAACATCTGAATAACTCTGATGCAGGCAATTATATAATGTCCAGGCCACCTTCTTTGTCACTTGATGACAGAATGCTGAGGGCTTTATCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGGATGGTAATCAATTCATCTTAAGCACAAGTGAACAACCTTATTTGCTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCCAGGACATTTAAATTTTCCGCAGAAGGAAAATCTGGTTGTTTCCAAGGACTTCCTGGTCGTGTATTTACCTCCAAAGTTCCTGAGTGGACATCAAATGTTGGTTACTACAGTATGAGTGAGTACTTAAGGTTCGAGCATGCAATTAATCATCAGGTTCGTGGATCAATTGCATTTCCCATATTTGATGTGCACTCGGAACAGTCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCAGATTTCAACAGAGAGTTAGAAATTGTTTGCCGTGCACTCCAGCTTGTAAATTTGAGGACCACCAAGCCTCTCCGATATCTTCCCCAGTGTCTTTCAAACAACAAAAAAGCTACTTTGACTGAAATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGATTCCCTGTTTTTACACTGAGGGATCAAGAGGTGAAGCTACAAGGATGCAAATTAAAGGGGGTCATTCAAGTACTAGTGGAAAAAGCATACTCTGCATTGAAGAATCTGCTTGCTATATAACTGATAGAGCATTGGCAGGATTTGTCCGTGCATGCACAGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGACATATGATATTAGTGAATACCCACTTGTCCATCATGCACGCAAATATAATTTGAATGCTGCAGTTGCTATTAGGCTAAGGAGTACTTATACTGATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAGCAACAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGAACAGTTTCAGATGCGGAATTATCAAGAATAGAAAGCTCACAAGTAAGGTTTGGAAAGAAAAATGCCCCCTGCTTTTTTCCTTTGTCAAGTCAAAACTCTGAAGTATCATTAATAAATGGTGTGTATCAATCTGTCCCGAATATGTCATTGAAGTCAACTAATGTAAGAGACAATGAAATTGATTCTTCTGCTAACCAGGGAAGAAATGGAACAAAAAGACAGGTCCATAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGCCTGAAGGATGCTGCAAAAAAAATTGGTGTTTGCCCAACAACACTGAAAAGGATATGTAGGCAACATGGAATTTCAAGGTGGCCATCCCGTAAGATTAAAAAAGTGAGTCGATCACTGAAGAAGATACAGACTTTGCTCGACTCTGTCCGGGGAGTGGAAGGAGGGCTGAAGTTTGATCCCTCTATGGGGGCATTTGTGGTAGCAAGGTCAACCATCCAGGAAATTGATGCATATAAAAGTCTTCAGTTTTCTGAGAAAAGTATTATAAAAGACCCTTCACCTGTTACACAAGAAGCAGTCCTAGTACCATCTGCACCTTGTAGTGAAAGTGAGAAATTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAATGAATGTTTTTTCAGTTGATTGTAGTGAAGATTCAAAATCAATTGCAATAGATAATGGGTCGTGCCAGATGGAAAGCCTTTGCACCAAGGTGCAAGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTCTTGCAAAAGAACAGGATAAACGGATTCTCAACAAGAGTGGTTTTGGAATAGAAAATTTAAAATGCAATATTCTTGGCCACAGTTCCAATTCCTTGATTGACAATGAGATAGACATTGGTGTAGATGGGGATAATGGGGTTGTTGAACCTAACCAACCTACTTCCTCAAGCTTGACAGACTCATCTATTGGTTCTGGTTCAATGATGCATAGTAGTTCATTAGGTTCTCAGAGCTTCGAGAACCAGATTCAGTCCAAAGTCAAATCAGCCATTGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAATTTGACCCGTCTGCTGGTTGTTTGAGGTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGTTCATTCCAGCTCAAATATTTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACGCTGATTTGCAAGAATGTCTAGAAATATTGGATGATATTGGCACATATTGCGTCAGGTTTCTTGTTCGTGACGTGCCTTCTGTTTTAAGCAGTTCTGGCAAGTGCTGGAGTTTAAATGGGATTGCCTTTTTAACATACTTTTTCATTGGATGCTCTAGCGGTTCTTTTAAAGTACTTAAAAAAGACCAAACTTCAATGATACTTCAGATTACAGATTATGAAGAATCGATGATTGCACCTGGAACAATGTCTGAATTAGCATTTAATAAATATAAGCGATGGCAGTGGTGGTTTCTTGTGGCACTTAGCACGGCCTATCTTATCAAGGTCAATCTGCTGGTGTTATCCTTGGCAGGTTTTACTACGCTCAGGGTGGAAATAGCCAATGATGGCTACTCTAGTTTAAACTGCTGCCTTCCCGATCTTATTCATGATATTGTATACAATTCCTTCACCTTCAGACGCTTCAACTCTGTTTCACCTTCCATTATTGTTTTGATATATATGTTGTTCTACGTGTCTTGA 3333 0.3951 MEYPFSSKERDIGDWQSSGTQLVGSASLEDRMSNLISEDMPNSFSELMNFDSYAGLCNNPSISDQILANQLPSFGSLSYSSPDGFDLIQQNSGQCYMSGVGRNNNDMESSAIYGEKVVCQQMDTLLGFLNDANEANNLNSKLKINGSSQHLNNSDAGNYIMSRPPSLSLDDRMLRALSFFKESAGGGILAQVWVPIKDGNQFILSTSEQPYLLDQMLAGYREVSRTFKFSAEGKSGCFQGLPGRVFTSKVPEWTSNVGYYSMSEYLRFEHAINHQVRGSIAFPIFDVHSEQSCCAVLELVTTKEKPDFNRELEIVCRALQLVNLRTTKPLRYLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWIPCFYTEGSRGEATRMQIKGGHSSTSGKSILCIEESACYITDRALAGFVRACTEHHLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTDDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICSSLRTVSDAELSRIESSQVRFGKKNAPCFFPLSSQNSEVSLINGVYQSVPNMSLKSTNVRDNEIDSSANQGRNGTKRQVHKNRSTSEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKIKKVSRSLKKIQTLLDSVRGVEGGLKFDPSMGAFVVARSTIQEIDAYKSLQFSEKSIIKDPSPVTQEAVLVPSAPCSESEKFSIKLEGKLKKMNVFSVDCSEDSKSIAIDNGSCQMESLCTKVQDCPEQACLGSVLAKEQDKRILNKSGFGIENLKCNILGHSSNSLIDNEIDIGVDGDNGVVEPNQPTSSSLTDSSIGSGSMMHSSSLGSQSFENQIQSKVKSAIVDSGSKLIVKAIYREDTIRFKFDPSAGCLRLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLEILDDIGTYCVRFLVRDVPSVLSSSGKCWSLNGIAFLTYFFIGCSSGSFKVLKKDQTSMILQITDYEESMIAPGTMSELAFNKYKRWQWWFLVALSTAYLIKVNLLVLSLAGFTTLRVEIANDGYSSLNCCLPDLIHDIVYNSFTFRRFNSVSPSIIVLIYMLFYVS 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00318 1110 Pfam RWP-RK domain 603 651 IPR003035 -
Spst5g00318 1110 CDD PB1_NLP 880 960 IPR034891 -
Spst5g00318 1110 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Spst5g00318 1110 PANTHER PROTEIN NLP8 136 968 IPR045012 GO:0003700
Spst5g00318 1110 MobiDBLite consensus disorder prediction 575 589 - -
Spst5g00318 1110 MobiDBLite consensus disorder prediction 828 853 - -
Spst5g00318 1110 ProSiteProfiles PB1 domain profile. 879 961 IPR000270 GO:0005515
Spst5g00318 1110 Pfam PB1 domain 882 960 IPR000270 GO:0005515
Spst5g00318 1110 MobiDBLite consensus disorder prediction 830 853 - -
Spst5g00318 1110 MobiDBLite consensus disorder prediction 575 602 - -
Spst5g00318 1110 Gene3D - 876 952 - -
Spst5g00318 1110 SUPERFAMILY CAD & PB1 domains 876 964 - -
Spst5g00318 1110 SMART PB1_new 879 961 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00318 Spst-Chr5 2684801 2690963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00318 1 969 NLP Transcription Factor Family AT2G43500 49.039 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst5g00318 PB1 5.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00318 - - gmx:100804426 1581.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00318 5 2684801 2690963 Spst5g00318 5 2684801 2690963 ECH
Spst5g00318 5 2684801 2690963 Spst2g02443 2 24085888 24090124 PCT