Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00306 ATGAATTGCTTGTGTGAGAATGACTGTGGTCTATTTTCTTCTCATTCAACATCACCAAGTGTTAGTGGATGCCCATTATGGGGGACTTCTCAATCCAGAAGTTTGAGCTTGAAAGTGGATCTTCTCCCACAACAATGCCACAGGAGCACAACATTGAGTTTTCATTTCCAAGATCAAGATTCATCTTCAACTCAATCCGATAAATCTTATCCTGGAGTTGGTTCAGCACAATCCGGTATTGGATTTGAGCCCTATGGCTTATTCAGTATCAGAAAATTCTTGTTAAATTCCCCGGCTGTTTACATCATATACCATATTGATGAGTATTTCTCTGCTTTGGATTTAGATCAAATGTATGTTCAGCATAGTTCTACTGGTTCAACACTTGGCACAACCGGGGGAAAAACTATTGGATGTGTCATCAGGTCATTTATGGGGAGTCATGATTTCACCTACCCTCCTCCACTATTGGATCACAGCCAAACACTTGCTCACATTGCACGTCACTATGCTGATCCATGCTATAGCAGCCTAATTGCTTCTTCATATGGTCCACAGTGTAAGATTCCTCGTGTCCAGCCAGTGGAAACTGCTCCTATTCGAATTCCTCTGCCATTGGACTTTACAGAAGAACCAATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACATTATCGAGCAAAACTTGAAGGACATAACAAACCCATCAAAGATCGGAAACCTTATCTTCACGAGTCCCGCCATCTTCATGCATTGAAGAGAGCAAGAGGTGCTGGTGGACGGTTTCTCAACACTAAAAAGCTTCAACCATCAAATCTTTTACGTGGAAATACTGCAGAATCTAACATGCATCAAATGCAAAACTATAGAGATTGTGATAATGCCAGAAATATGCAGAATTATACATCTGATGAGGGTGGTGGTGGACCCACTCAGCACCATCTATTTTTCTGCACGTGA 972 0.4146 MNCLCENDCGLFSSHSTSPSVSGCPLWGTSQSRSLSLKVDLLPQQCHRSTTLSFHFQDQDSSSTQSDKSYPGVGSAQSGIGFEPYGLFSIRKFLLNSPAVYIIYHIDEYFSALDLDQMYVQHSSTGSTLGTTGGKTIGCVIRSFMGSHDFTYPPPLLDHSQTLAHIARHYADPCYSSLIASSYGPQCKIPRVQPVETAPIRIPLPLDFTEEPIYVNSKQYHAILRRRHYRAKLEGHNKPIKDRKPYLHESRHLHALKRARGAGGRFLNTKKLQPSNLLRGNTAESNMHQMQNYRDCDNARNMQNYTSDEGGGGPTQHHLFFCT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00306 323 SMART cbf3 208 269 IPR001289 GO:0003700|GO:0006355
Spst5g00306 323 ProSitePatterns NF-YA/HAP2 subunit signature. 214 234 IPR018362 GO:0003677|GO:0016602
Spst5g00306 323 ProSiteProfiles NF-YA/HAP2 family profile. 209 269 IPR001289 GO:0003700|GO:0006355
Spst5g00306 323 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 45 309 IPR001289 GO:0003700|GO:0006355
Spst5g00306 323 Gene3D - 209 270 - -
Spst5g00306 323 PRINTS CCAAT-binding transcription factor subunit B signature 212 234 IPR001289 GO:0003700|GO:0006355
Spst5g00306 323 PRINTS CCAAT-binding transcription factor subunit B signature 243 266 IPR001289 GO:0003700|GO:0006355
Spst5g00306 323 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 211 266 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00306 Spst-Chr5 2622334 2624069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00306 160 297 CCAAT-HAP2 Transcription Factor Family AT1G17590 51.333 1.27e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst5g00306 CBFB_NFYA 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00306 K08064 - gmx:100803893 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00306 5 2622334 2624069 Spst5g00306 5 2622334 2624069 ECH
Spst5g00306 5 2622334 2624069 Spst4g02187 4 62623608 62626388 PCT