Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00305 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCAAATGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTGCCTCCAGAGCTTCCTGAACCTGTCTTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCATTTTATTTTGGTGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTTCCAACAATATTTGAAGTTGTTACAGGTGCAGCAAAGAAACCAGTTAAAGAGAAGTCTTCAGTTTCAAACAACATTGGCATCAAATCTAAGTCTAACTCTAAAGGGCGGGCTTCCGAAACCCAGGGCAGACAGGCAAAGGGATTATTACAACCAAAAGATGAGGATGAAGGACCAGAAGAGCAAGATGACGATGAACATGGAGAGACCTTGTGTGGGGCATGCGGCGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 750 0.4453 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGAAKKPVKEKSSVSNNIGIKSKSNSKGRASETQGRQAKGLLQPKDEDEGPEEQDDDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00305 249 PANTHER CPG BINDING PROTEIN 5 249 IPR045104 GO:0006355|GO:0042393
Spst5g00305 249 SMART PHD_3 196 244 IPR001965 -
Spst5g00305 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Spst5g00305 249 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Spst5g00305 249 FunFam PHD finger alfin-like protein 189 245 - -
Spst5g00305 249 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Spst5g00305 249 MobiDBLite consensus disorder prediction 147 171 - -
Spst5g00305 249 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Spst5g00305 249 MobiDBLite consensus disorder prediction 147 192 - -
Spst5g00305 249 CDD PHD_AL_plant 196 246 IPR044104 -
Spst5g00305 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Spst5g00305 249 Pfam PHD-finger 197 246 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00305 Spst-Chr5 2617452 2621248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00305 6 249 Alfin-like Transcription Factor Family AT3G42790 74.590 6.62e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Spst5g00305 Alfin 8.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00305 K26274 - gmx:100170696 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02188 4 62631490 62635659 Spst5g00305 5 2617452 2621248 ECH
Spst9g00638 9 5556262 5563869 Spst5g00305 5 2617452 2621248 ECH
Spst5g00305 5 2617452 2621248 Spst5g00305 5 2617452 2621248 ECH
Spst5g00305 5 2617452 2621248 Spst4g02188 4 62631490 62635659 PCT