Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00288 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGACTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACACGGTTGCTGGAGTTCAGTCCCAAAACTTGCAGGCCTGCAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATCTAAGACCTGATTTGAAACGAGGAAGCTTTTCTCCTCAAGAAGCAGCACTCATCATAGAACTTCATAGTATTCTTGGCAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACTGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACGGTCCTGCAAATGGTTCCATGGAAAGTTTCTTCCCTTTTACTGACAACCCTATCCTAAACTCCCATCATCACTTAGATCAGCTATACCTTCCCATCATCCCAACCCCAATCCTACAAGCCTTTGATCATCTCAACAACGATCTCAAGATTGACATAAATAATTATGATAATAATGCAAATTTCCTACATTTTCCGAATCCAATGCCAGAAACAGTGCCACCTTCCAATAACATCATTCCATCTTTGTATGAATTAGATACATGGTCGTCGTTCGGGTGTGTACCCATTCATCTTAATCCAACTCAAGAAAATCAAACAATGATCACCAAAAGTGATACCACCCCACATTTTATTGTCGAGAAATTCACAAATCCAAGTACATGGCAGCAGCACTCTGTGGAACCAACCATCGATACTGTGCCAAAAATGTGTGAGAGCATTGAGGATTATGTCTGTAGCATCCCATTTTCTTCTTCTGTCAATTCACAAGATCAACATGAGGATGCTGTTGCGTGTTACACACCTCGTGGTATTTGTCCACAAGATCAAATTGCAGCACCCAATCAAGTGGAGTTCATTGATGCCATCATCATGTCATCGTTGCCATCCTCAACAACATCGTCTTCATCAGTATCACTCTATCAAGCAGACAAATAG 1053 0.4141 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHGPANGSMESFFPFTDNPILNSHHHLDQLYLPIIPTPILQAFDHLNNDLKIDINNYDNNANFLHFPNPMPETVPPSNNIIPSLYELDTWSSFGCVPIHLNPTQENQTMITKSDTTPHFIVEKFTNPSTWQQHSVEPTIDTVPKMCESIEDYVCSIPFSSSVNSQDQHEDAVACYTPRGICPQDQIAAPNQVEFIDAIIMSSLPSSTTSSSSVSLYQADK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00288 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst5g00288 350 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Spst5g00288 350 SMART sant 66 114 IPR001005 -
Spst5g00288 350 SMART sant 13 63 IPR001005 -
Spst5g00288 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst5g00288 350 PANTHER MYB DOMAIN PROTEIN 55 1 145 - -
Spst5g00288 350 FunFam MYB transcription factor 6 66 - -
Spst5g00288 350 CDD SANT 17 61 IPR001005 -
Spst5g00288 350 FunFam Myb transcription factor 69 116 - -
Spst5g00288 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst5g00288 350 Gene3D - 69 116 - -
Spst5g00288 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst5g00288 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst5g00288 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst5g00288 350 CDD SANT 69 109 IPR001005 -
Spst5g00288 350 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00288 Spst-Chr5 2529467 2530819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00288 1 119 MYB Transcription Factor Family AT3G13890 96.639 9.94e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00288 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00288 K09422 - gmx:102662609 614.379