Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00283 ATGGATTGTTATCCTTCCCAACAACACTCGCAATTTGAAGCTGAACCAGGCGCCTACGATGGCTATGCCATAGACGAGCACGTAAAACCCTCTTCCAATCGTCGTGATTCGTCTTCAGGGAAACTCTTCGTTGGCGGCATTTCGTGGGAAACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTAATAATGACGAATAAACTTTCTGGAAGGCCACGAGGGTTTGGCTTTGTAACATTTGCCGATTCAGCTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGTTTTTGGAGTATTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCACTGATGATGAGTTGAGGGGATACTTTTCACCTTATGGTGATGTTATTGAGTGCCAAATCATGCTAGATCACAATACTGGGCGATCTAGAGGATTTGGATTTGTCACTTTTGATGATGAAGATTCAATCGAAAAAGTTTTTTCAGCGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACATCAGTACCACGCGAAAGTCGTATGGTGGTTTTGGCAATGGAATGGATGGATATGGTGGGAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAACGGAGCATATGGCCATTTTGAGGGAAGCTTTGGTGGAAGTGCTGCCACTGTGTATGGTGGTTATTGTGGATATGGTTATGGCTTTGGATATGGTGGGCCGATGTATTGCTATGGCGGTTATGGACTCAATTCTTATGGTAATCCTCCTGGGAGTTATGGTGGCATTCCTTCCTATGGAGATGGTAATGCATATGGAAGGAACGGTAGTTTCAATCGCACCAGTGGCTATGATGGTGGCAAAGGGGCTGAGAAGGATGATGGTCCTACGACTGGAAGGTACCATCCTTACTGGAAGTGA 1062 0.4331 MDCYPSQQHSQFEAEPGAYDGYAIDEHVKPSSNRRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEVFGVLKTKKIFVGGIPQLFTDDELRGYFSPYGDVIECQIMLDHNTGRSRGFGFVTFDDEDSIEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDHISTTRKSYGGFGNGMDGYGGNSSRNRNHGKRGGQYTDSGMNGAYGHFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSYGNPPGSYGGIPSYGDGNAYGRNGSFNRTSGYDGGKGAEKDDGPTTGRYHPYWK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00283 353 Gene3D - 124 260 IPR012677 -
Spst5g00283 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 25 352 - -
Spst5g00283 353 SMART rrm1_1 41 112 IPR000504 GO:0003723
Spst5g00283 353 SMART rrm1_1 130 203 IPR000504 GO:0003723
Spst5g00283 353 SUPERFAMILY RNA-binding domain, RBD 33 120 IPR035979 GO:0003676
Spst5g00283 353 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 121 256 - -
Spst5g00283 353 SUPERFAMILY RNA-binding domain, RBD 128 235 IPR035979 GO:0003676
Spst5g00283 353 Gene3D - 38 121 IPR012677 -
Spst5g00283 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Spst5g00283 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Spst5g00283 353 MobiDBLite consensus disorder prediction 329 353 - -
Spst5g00283 353 MobiDBLite consensus disorder prediction 220 248 - -
Spst5g00283 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Spst5g00283 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 120 - -
Spst5g00283 353 MobiDBLite consensus disorder prediction 232 248 - -
Spst5g00283 353 CDD RRM1_hnRNPA_hnRNPD_like 42 112 - -
Spst5g00283 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00283 Spst-Chr5 2498659 2501395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00283 42 217 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 2.80e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00283 K12741 - gmx:100818080 560.066