Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00277 ATGTCTAATTTGACTTCTGCATCGGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAACAATACTTTGCTCCACAATCAACTCAAACCCAGATTCCACTAAAGAAAAAGAGAAACCTTCCAGGGAACCCAGACCCGGAGGCTGAAGTTGTCGCGTTGTCTCCAAAGACTCTCTTGGCCACGAATAGGTTCATTTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGAACGAGCAAAGAGATCAGGAAGAAGGTTTATGTGTGCCCAGAACCAACTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATAGACATACCCAACAACTCAGCTCCAACTCTAACAACACCTCATCAACAGGGAGCAGGAGTAGTGATCTCTTCATCTTCTCATCATCAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAGCAAGGTTTCATGCCACCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCTTCTTCCTCATCATCATTCTTCTCTCACCAAGATCACGTGAGTAGTCTCCATGAAAACCCTAACCCTAGAGGTGGTGGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCGCCTTCCTCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATGAGCAAAACTGGCTCCATGATCAGGACCCACCAACAGACTCACGTGTCTGCTGACTCTTTGAATTTGTCCTCACGTGACGACCAGACGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGAAATAAAGCAGTTCCTGGTGTTAGCGTTGGTGTTTCTCCATCACTCCTTCACCACGTTATCAACTCTTACTCTTCCCCTTTTGAAGGGGCTTCTTTTGACGATCCTTTTGATGGTGGCGTGACCGTGACGAAAACAACCGCCGCTGATGACGGTGTTTCCGGCGGAGGAAATAATAATGAGGCCATGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACTCTGATATTCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCCAGCATAACCAAACCCAAAACCCTTGGCAAGAATAA 1425 0.4877 MSNLTSASGEASASSGNRTEIGTDYSQQYFAPQSTQTQIPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIDIPNNSAPTLTTPHQQGAGVVISSSSHHQDIHGNNFPLKKEQQGFMPPWLGQPPSTIDLSSSSSSFFSHQDHVSSLHENPNPRGGGGGGPTLPPYPTAPSSPHMSATALLQKAAQMGATMSKTGSMIRTHQQTHVSADSLNLSSRDDQTTPTSNTTTPHGLVPFGNKAVPGVSVGVSPSLLHHVINSYSSPFEGASFDDPFDGGVTVTKTTAADDGVSGGGNNNEAMTRDFLGLRPLSHSDILNIAGMGNCMNSQHNQTQNPWQE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00277 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Spst5g00277 474 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Spst5g00277 474 FunFam protein indeterminate-domain 12-like 50 118 - -
Spst5g00277 474 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Spst5g00277 474 MobiDBLite consensus disorder prediction 330 370 - -
Spst5g00277 474 MobiDBLite consensus disorder prediction 246 314 - -
Spst5g00277 474 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Spst5g00277 474 Gene3D Classic Zinc Finger 50 117 - -
Spst5g00277 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 463 IPR031140 -
Spst5g00277 474 MobiDBLite consensus disorder prediction 1 53 - -
Spst5g00277 474 MobiDBLite consensus disorder prediction 263 286 - -
Spst5g00277 474 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Spst5g00277 474 Gene3D Classic Zinc Finger 125 204 - -
Spst5g00277 474 MobiDBLite consensus disorder prediction 1 43 - -
Spst5g00277 474 SMART c2h2final6 71 93 IPR013087 -
Spst5g00277 474 SMART c2h2final6 147 167 IPR013087 -
Spst5g00277 474 SMART c2h2final6 112 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00277 Spst-Chr5 2428965 2432442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00277 1 473 IDZ Gene Family AT3G13810 48.897 1.02e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00277 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00277 K25870 - gmx:100819692 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00277 5 2428965 2432442 Spst4g02240 4 63173926 63174882 PCT