Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00275 ATGAAGGCTCCCCTTGCGGCTTTATCTATTGCAGGATCAATGGAGAGTGGCACCATCACGTCAAGAACAACCTCACAAGCTTGCGCTGCTTGCAGATACCAACGCAGGAAGTGCGGACCCAACTGCATTCTCGCACCTTTTTTTCCTCATCATCGCCACAAACAATTCCGCCATGCCCATAGGCTCTTCGGAGTTGGCAAAATCACCAACATGATTAAACCTCTCGAGCCTCATAACAGAAACATGGCCATTGCCACCATTCTCTTCGAGTCCGATATGAGAGCCAAGGACCCTGTTGGTGGCTGCTCAAGGATCCTTCAACGCTTGAACTCTCAGATCGCATCTGCTCAAGCCGAACTTCAACTTGTACTTCAACACCTTGCCTTATTCCGAGCACAAGCTCATCATAATTCCAATGCCCCAATCCCTCCATCACCATCACCATCACCCTCATTCTTGCCTACCTCGTCCCCTTACCCTGGACAAATACGACTTCAAGAACAACAACACCATCACGCTTATAACTTGCATGAAGATATGAACATGATGGACCCACACAACCCCATTGCATAA 573 0.4852 MKAPLAALSIAGSMESGTITSRTTSQACAACRYQRRKCGPNCILAPFFPHHRHKQFRHAHRLFGVGKITNMIKPLEPHNRNMAIATILFESDMRAKDPVGGCSRILQRLNSQIASAQAELQLVLQHLALFRAQAHHNSNAPIPPSPSPSPSFLPTSSPYPGQIRLQEQQHHHAYNLHEDMNMMDPHNPIA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00275 190 MobiDBLite consensus disorder prediction 141 155 - -
Spst5g00275 190 Coils Coil 106 126 - -
Spst5g00275 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 166 - -
Spst5g00275 190 ProSiteProfiles LOB domain profile. 26 127 IPR004883 -
Spst5g00275 190 Pfam Lateral organ boundaries (LOB) domain 27 123 IPR004883 -
Spst5g00275 190 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00275 Spst-Chr5 2397173 2400075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00275 26 135 AS2 family AT3G13850 58.182 1.36e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst5g00275 LOB 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00275 - - vun:114184788 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00275 5 2397173 2400075 Spst4g02243 4 63187636 63189226 PCT