Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00252 ATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTTCTTTCCCTTCAATTGTGTATATGCAAAAGGAAAACCTGCTTATGTGTCCATCAGGATAGGGAAACAGAAGGTGGCGAAAACGACTCAAGAACGTGGACGTGTATGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGATGATTCAACTATCACCATTACACTGAAGACATCATGTTTCATTTTGGGAAAATTCCACATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGATTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAATCCTCAATTGAAGTTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGACAAAGGTACTAAACAATGGGGAGTTTCAAGGGGTGAGGGATGCTACATTCCCACTGAGGTCCAATTGCCAGGTCAAACTCTATCATGATGCTCACCATTCATCCACCTTCCACCCTCCTTTTGATCTTTGTGGCGCTCCGATTAAGCTGTGGGAAGATGTCTATAAAGCCGTTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCTAGGGAAATAAATCTGGGTGAGCTATTGAAGAAGAAGGCTGATGAAGGAGTAGCTGTAAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAAGGTGTGATGAACACTCACGATGAGGACGCTTTTGCTTACTTCAAACACACTAAAGTAATATGCACAAAGTGTCCCAGGTTACATCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACTCTATTCTGCTCATGCCAGAGAAATTATGAGTTTTTTGGGTGGTATAGATTTGTGTGGTGGCCGATATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGATTACCTTGACTTCTACCAGACAAACATTGCACAAGCTAGCCTTAAGAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTAACTAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTCTTCTAGTTCCTGCCAACACTTTAGAAAATCTCATTCCCACATGCTCAAGCACTCGTATAGAAAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGCGTCTGCAAGCCAGTTGTTTAGAAAGCTCACTGTGGAGAGAAGCATTCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAATATTTTATTGGGGGGTGCCATTTGTGGAAAAAAGATAGGCATAGTGGATGCAGCAATCTGATTCCGGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAGGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCACTGGACTAGAGAAACAATGACAATGATGTATCAGTTGATTGGAGAAGCAATAATAGAAAGTGGGGAACCAGGACATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGAGGAGTTTCTTCCACCACTTTCTCCCCATCCTGCGACACAATACTGGAATGCACAAAAGAATAGGAGGTTCCCGATTTATGTTCACTCTAAGATGATGATAGTGGACGACCTATACATATTAATAGGATCAGCCAACGTGAACCAAAGATCCATGGATGGAGAAAGGGACACTGAGATTGCCATAGGGGCCTACCAGTCTCAACATGGAGGTGATCACCACATAAACCATAGTGATATTCATGCATACAGAATATCACTGTGGTATGAGCACACAGGAAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGGTCAATAGGGGATCATATGTGGGAGATGTACAGTAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAAGTTACCCTGTGAAAATAACTCAAGAAGGGTATGTGCAGGATCCAGATGACAGTGATTGTAATTTTCCTGACACGAAATCTCCAGTGAGGGGGAAGAGATCAAAATTCTTAACCCCTATCTTTACCACTTAA 2277 0.4234 MEEMSKFLIHGTIEATIFNATPYSPFFPFNCVYAKGKPAYVSIRIGKQKVAKTTQERGRVWNQTFQIQCAHPDDSTITITLKTSCFILGKFHMQAKRLKEESLINGFFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWTKVLNNGEFQGVRDATFPLRSNCQVKLYHDAHHSSTFHPPFDLCGAPIKLWEDVYKAVEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKADEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICTKCPRLHHKFPTLFAHHQKTITVDTRTLYSAHAREIMSFLGGIDLCGGRYDTEKHSLFQTLAEESDYLDFYQTNIAQASLKKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLENLIPTCSSTRIERNWKVQVYRSIDHASASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWKKDRHSGCSNLIPVEIALKVVSKIKAGERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYQLIGEAIIESGEPGHPRDYLNFFCLANREKKEKEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKMMIVDDLYILIGSANVNQRSMDGERDTEIAIGAYQSQHGGDHHINHSDIHAYRISLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVSYPVKITQEGYVQDPDDSDCNFPDTKSPVRGKRSKFLTPIFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00252 758 Gene3D Endonuclease Chain A 445 648 - -
Spst5g00252 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Spst5g00252 758 SUPERFAMILY Phospholipase D/nuclease 148 407 - -
Spst5g00252 758 CDD PLDc_pPLD_like_2 445 648 - -
Spst5g00252 758 Gene3D Endonuclease Chain A 183 425 - -
Spst5g00252 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Spst5g00252 758 PANTHER PHOSPHOLIPASE D 8 740 IPR015679 -
Spst5g00252 758 Pfam C2 domain 39 110 IPR000008 -
Spst5g00252 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 39 132 IPR035892 -
Spst5g00252 758 PIRSF PLD_plant 2 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Spst5g00252 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Spst5g00252 758 SUPERFAMILY Phospholipase D/nuclease 426 687 - -
Spst5g00252 758 SMART pld_4 296 333 IPR001736 GO:0003824
Spst5g00252 758 SMART pld_4 603 630 IPR001736 GO:0003824
Spst5g00252 758 Pfam Phospholipase D Active site motif 605 630 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00252 Spst-Chr5 2266131 2268970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00252 31 758 Phospholipase D Gene Family (Wang group) AT1G55180 61.642 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00252 K01115 - gmx:100807431 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00252 5 2266131 2268970 Spst5g00252 5 2266131 2268970 ECH
Spst5g00252 5 2266131 2268970 Spst4g02257 4 63368209 63375240 PCT