Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00249 ATGGACGCCGAGGCCAACTCAAGTGAAAACCCTACTATAAGGTCAAACTGCTGCGCCTCACTTTCGATACACAAATGCTCAGCATGCTATAAGCAATACAAGAAGAAAGAACATCTAATTGAGCACATGAAAACCTCAAACCATTCTGTCCATCAACCTATGTGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGACCTTTGCCAAGGGGAGTTTGTTCGAAGATTTTCTCTCAACAGGGCTGTCAACTTTGCTTAGTACTATTTGATAGTCCTGGGTCTCTCCTAGTTCATAAAGAAACATGTCGCGTATATGCCCCTACTCGTCTAGGAACAAGGGAACTGCCCTATATAGATTCCCAATTTGACTGTCCTTCTGATGAAAATCATGTTGGCGGGGGCCCTGGGGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGAGGAAGTGATGGTTCTCTGGAACTTTGTGGAAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTTCACACTTATGTACAGCCTCGAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAACATCTCAGAAATGCCATGCCCCTAAAGGAAGTTCGAGAAAAAGTGTTGCAAATTCTATACAATGGAGAATCCTTTGCCAAAGTTAGACGAGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACATGATTTAGATTGCTTGAATATGAATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCCTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACTTATCTTGGTTATGATATCCAATTAGGCACTCATGACCCGTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGAGCTCAAATTCATCCAGAGGAAGGCCATGGAACATTGACTCCTAGAAACAGTATTGTTAGTCTGCCTGATAGCTGGAGATCCAGGGAACTTGACAACCTCACACCAGATCAACTTTATGCCATGTCTAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCAAGATTGAAGCAGGAATCAGATTTCACGGAAAACGAAAGCAATGAATTTCACTTCATGGATGGCAACCGACATCTTTAG 1185 0.4262 MDAEANSSENPTIRSNCCASLSIHKCSACYKQYKKKEHLIEHMKTSNHSVHQPMCGVCQKHCKSFESLREHLTGPLPRGVCSKIFSQQGCQLCLVLFDSPGSLLVHKETCRVYAPTRLGTRELPYIDSQFDCPSDENHVGGGPGGAVAMDCEMVGGGSDGSLELCGRVCLVDEDENLIFHTYVQPRIPVTNYRYDITGLTEEHLRNAMPLKEVREKVLQILYNGESFAKVRRDGGKARLLVGHDLAHDLDCLNMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQLGTHDPYEDCISVMRLYKRIRAQIHPEEGHGTLTPRNSIVSLPDSWRSRELDNLTPDQLYAMSRSDYKCWCLDLRPRLKQESDFTENESNEFHFMDGNRHL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00249 394 Pfam Exonuclease 147 310 IPR013520 -
Spst5g00249 394 Gene3D - 144 323 IPR036397 GO:0003676
Spst5g00249 394 SUPERFAMILY Ribonuclease H-like 147 314 IPR012337 -
Spst5g00249 394 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 27 319 IPR047021 GO:0004527
Spst5g00249 394 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Spst5g00249 394 CDD REX4_like 147 311 IPR037431 GO:0006364|GO:0008408
Spst5g00249 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 53 IPR013087 -
Spst5g00249 394 SMART exoiiiendus 145 319 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00249 Spst-Chr5 2252610 2258771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00249 1 366 C2H2 Transcription Factor Family AT3G27970 50.267 4.95e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00249 K18327 - gmx:100805841 657.907