Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00243 ATGTCGACAGTGCCAGGACAATTGATATGGGAGATTGTGAAGAAGAACAACTGTTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGGAGTTCAGCAGAGAACCCAACAATCTCTATAACCTCAACACTTTCAAGTACTCTGGTTTGGCGAACAAGAAAACTGTCACTATTCAGTCTGCAGGTAAAGACCAATCTGTATTACTTGCTACGACTAAGACAAAGAAACAAAATAAGCCTGCTTCTTTGCTTCACAAATCTGTCATGAAAAAGGAGTTCCGAAGAATGGCAAAGGCAGTGCAAAATCAGGTAGCAGATAACTATTACAGGCCTGATCTAAAAAAGGCAGCTTTGGCAAGGTTGAGCGCTGTCAACAGGAGCCTTAAAGTTGCAAAGTCTGGAGTGAAGAAGAGAAACAGACAGGCTGTGAAGGTCGCTGGGCGGAAGTGA 453 0.4415 MSTVPGQLIWEIVKKNNCFLVKEFGRGTQSVEFSREPNNLYNLNTFKYSGLANKKTVTIQSAGKDQSVLLATTKTKKQNKPASLLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVAGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00243 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Spst5g00243 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Spst5g00243 150 Gene3D - 6 133 - -
Spst5g00243 150 FunFam 60S ribosomal protein L28 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00243 Spst-Chr5 2178557 2180541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00243 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 73.427 1.51e-77 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00243 K02903 - gmx:100499963 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00243 5 2178557 2180541 Spst5g00243 5 2178557 2180541 ECH