Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00238 ATGGCGAGCATTTCGAACTTAACCAACACTCTGCCACTGCACGTTCGAAGGTTCCGACCTTCTCGCTATTCTTCTCTCTGTACTCTCTCTTGTTCTCTAGCTGAAGACGTCGATCCCAAACCCCCCATTCCCAAACCCAATTCGTACTTCCCGAAGCGTGGCCAAACCCTCGAACTCGTGTGCGAGTCCCTCGCCTTTAAAGGCAAGGGCCTCTGCAAAGTCACCGAGACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCCGGCGAACACTTCATTGGCCGCGTCACTCGCAAAAAGGGAAATTACGCCGAGGTAACTAAGGTGAAGACTATAACTCCTCCACGCGACATTGTGGATGCTCCTTGTGTCTACGCACCTTATTGTGGAGGCTGCAAGACGCAGAACTTGTCCTACGAGGCTCAGCTCAGAGCCAAAGAGGAGCAGGTCCGTGACTTGTTGATTCACGTGGGAAGGTTTTCGCGCGAACTGGTTCAATTGTACGGTGTTATTAAGCCAATTGTTCCTTGTGATATTCAGTTTCATTATAGGAATAAGATGGAATTCTCCTTCGGTCCCCAAAGATGGTTGCCTAGAGAGTCACTGCATGACCGACGTGTTGATGATGCTGGTAATGAAAATGAAAATTTTGCGCTGGGATTGCATGCTCCGGGTTTTTTTGATAAAATTCTAAATGTTGACAAGTGCTTATTGCAATCTCATCCTGCTAATAAGGTACTTGCAGCTATCCAAGAATGTTGGAGAGATCCACAACTGGGTTTTTCTCCATATAATGTTCATTCACACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGCAAACCAAACTGCTTGGTGGCAAAACTTGGTGTTTTGCACAGCCAGGCATCTACTTTGGAGTTAAAGATGTCTATAGTTATTTTTGCAAATAAATTACCCTTGGATGTAACAACTGGTCAGCCTGAAATTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGCAGTTCCTAGTTGATAAAGTTTCTGCATTTTCTGAAGTGGTTGAGGTTTTATATAAGCTTATAGAAGATTGCGCTGGAGTCAAGGGTGATGGGTCGGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGTGTAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTTGTCTTAATGCCAAGATAAATGGCATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAAAATTTTGGCAAGAATTTTCCTAAACCTGATATCGTCATTTCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATTGTGTATGTGTCATGTAATCCTGCCACATGTGCACGCGATCTTGATTTTCTTTGTCATGGTGTGGAAGAACAGAATATAAAAGGATGTTACAAACTAATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGCGTTTGCCTTCTGGAGCTTCAATGTTCGAAAAGATTGGATTCATGCTTAGCAGCTTCCAGATGTGGATTACTGTTAAGTGTTGATCCCACTCATCATGAGATTGATCTTATGTTACACTTGTCAGATCTTGGTATATTTGAGGTGCAGACAACAGGAAGAATAACAGAAGTTGAAGCAATTCATACTTTCCTCCAACCAAGCACATCTTCTATGGTAAAGCCAAGCAAGGAAGTCATGGTTGTGTCGTGGGGTTCATCATCATCTCATCTTTATTCAATGCAGTTTGTCATAGCAGACATTGCTCCATGCTTATCTCACTTTGTCTCAAGTTTCCATCCTGTTATAGGTCTTGAGAAGACTCTGGCTATTGGGCCGAGTCGAGCCGAGCTGAGCCGAAGAGCTAACAAGCTCACGTCCTATGTTCTTGGGCTGGCATATTGTAGGCCCAAAGTGGGGCCCACCAACCTGAAAATGGATGGGCCACGGTGCAAACACTCTGCATCATCAGTACTGGGTAGTATTCCATGGCATCTGAAGTTGAAGAAGGCTGTTATGCTACTACCAGATTGTACGCAAACTGATACATCCTCTTCTGTTCAGTTACTGATACTAGCAAGGATTCTTCCCATCCTTTTGGCTCTTGGTTTAGCTTTCTGGTTTTTGAAGCAGCTAGATCTAGCACTGCAATCATCTATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAAGACCTTGAAGGAGAGTATCACCATTTCATGCCTCGCATAAGGTCAAGTGCTCTCAGTCAAACAGGTTATCCATATCCCCGTTCTGAAAAAGTGAGGGAGATGGTTCAGCCATCGTCATGTGAGATAATGAGTATGTTGCCAAACACGAATCTAACAGCAACCATGCCTGTGAATCCAGGAGCAGCTGGAGCCAGTTGGGAAGAAGCTTTAACACCCCAATCATGCCCGTCCCTTTCGGTGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACGAAACCTTACCAATGACACACAAAACGGCAAGGCTACCTGCTCTCTTGGGTCACTTGATTGCTTGTTTTCAGCTACTAAGAATAGAAACATAGACACGTCTGTCGAAGATGATGGGATTTCCATGATGGCTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGCAGTGCAGTTTCCTCTGGTGACTCTGAGAGCAATGGTTCCAATGCTAGAAACAGTGACATGCGGTATTCATCAGTGAATGAGCTGGATGAAACAGTGTCTCAAAGCTTCTCTGATCAATATCTCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGAAATTCATGCTTCAGCGTTGCTCAGAATTCTTCTGCTACTGAAGGTGGTTTTAAGCTCATCTCAGAGACTTCACCAAAGTCAAAGAGACCCAGATGGGATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCATCTTCCTTTGAAGAACCTGATCCAGAGGCCGTAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGATTAGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCGCAAGTCAAAGTACTAGAAAATTTAGGTAACAAGCCTGACACAATGAATTGTCCTCCTACTAACATAGCATTCTCTTTCAACCCTTCTTTTCCCATACAAACATTTCCCCGTCCAAAACCCTAG 3519 0.4416 MASISNLTNTLPLHVRRFRPSRYSSLCTLSCSLAEDVDPKPPIPKPNSYFPKRGQTLELVCESLAFKGKGLCKVTETGFVVLCDRALPGEHFIGRVTRKKGNYAEVTKVKTITPPRDIVDAPCVYAPYCGGCKTQNLSYEAQLRAKEEQVRDLLIHVGRFSRELVQLYGVIKPIVPCDIQFHYRNKMEFSFGPQRWLPRESLHDRRVDDAGNENENFALGLHAPGFFDKILNVDKCLLQSHPANKVLAAIQECWRDPQLGFSPYNVHSHKGFLKHLMLRTGSKPNCLVAKLGVLHSQASTLELKMSIVIFANKLPLDVTTGQPEIMVNFVTSSYKPELLQFLVDKVSAFSEVVEVLYKLIEDCAGVKGDGSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDACLNAKINGIQNATFVQGDLNKIDENFGKNFPKPDIVISDPNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDLDFLCHGVEEQNIKGCYKLISLQPVDMFPHTPHIECVCLLELQCSKRLDSCLAASRCGLLLSVDPTHHEIDLMLHLSDLGIFEVQTTGRITEVEAIHTFLQPSTSSMVKPSKEVMVVSWGSSSSHLYSMQFVIADIAPCLSHFVSSFHPVIGLEKTLAIGPSRAELSRRANKLTSYVLGLAYCRPKVGPTNLKMDGPRCKHSASSVLGSIPWHLKLKKAVMLLPDCTQTDTSSSVQLLILARILPILLALGLAFWFLKQLDLALQSSMDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHFMPRIRSSALSQTGYPYPRSEKVREMVQPSSCEIMSMLPNTNLTATMPVNPGAAGASWEEALTPQSCPSLSVNMNQTSNYVADFNMAHQQRNLTNDTQNGKATCSLGSLDCLFSATKNRNIDTSVEDDGISMMALSDCRNLWNFSYGSAVSSGDSESNGSNARNSDMRYSSVNELDETVSQSFSDQYLSQGRVIDSEVICTKGRNSCFSVAQNSSATEGGFKLISETSPKSKRPRWDKHPGSSNINFQQPNSSVSSSFEEPDPEAVAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKVLENLGNKPDTMNCPPTNIAFSFNPSFPIQTFPRPKP 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00238 1172 SMART finulus 1087 1136 IPR011598 GO:0046983
Spst5g00238 1172 Pfam tRNA (Uracil-5-)-methyltransferase 354 523 IPR010280 GO:0006396|GO:0008173
Spst5g00238 1172 Gene3D - 184 349 - -
Spst5g00238 1172 MobiDBLite consensus disorder prediction 1003 1042 - -
Spst5g00238 1172 FunFam 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 341 519 - -
Spst5g00238 1172 FunFam RNA methyltransferase family protein 47 129 - -
Spst5g00238 1172 SUPERFAMILY Nucleic acid-binding proteins 44 105 IPR012340 -
Spst5g00238 1172 Gene3D - 46 129 IPR012340 -
Spst5g00238 1172 Gene3D - 1086 1141 IPR036638 GO:0046983
Spst5g00238 1172 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 130 525 IPR010280 GO:0006396|GO:0008173
Spst5g00238 1172 PANTHER RNA M5U METHYLTRANSFERASE 46 356 IPR010280 GO:0006396|GO:0008173
Spst5g00238 1172 Gene3D Vaccinia Virus protein VP39 131 519 IPR029063 -
Spst5g00238 1172 ProSitePatterns RNA methyltransferase trmA family signature 2. 507 517 IPR030391 -
Spst5g00238 1172 MobiDBLite consensus disorder prediction 1023 1041 - -
Spst5g00238 1172 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1086 1141 IPR036638 GO:0046983
Spst5g00238 1172 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1081 1130 IPR011598 GO:0046983
Spst5g00238 1172 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 523 IPR029063 -
Spst5g00238 1172 ProSiteProfiles TRAM domain profile. 50 110 IPR002792 -
Spst5g00238 1172 Coils Coil 1120 1140 - -
Spst5g00238 1172 Pfam Helix-loop-helix DNA-binding domain 1091 1130 IPR011598 GO:0046983
Spst5g00238 1172 CDD AdoMet_MTases 374 465 - -
Spst5g00238 1172 NCBIfam 23S rRNA (uracil-5-)-methyltransferase RlmD 64 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00238 Spst-Chr5 2140004 2160296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00238 854 1164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.057 3.82e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00238 tRNA_U5-meth_tr 4.9e-13 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00238 - - vun:114183834 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00238 5 2140004 2160296 Spst5g00238 5 2140004 2160296 ECH