Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00234 ATGGATGGAAAATGGAGATGCCATTGGGCTTGGTGCTTCACCTTATGGTGTGTTCTTGCATATACCATTTCAGAATTTTTAGGAAAGTCCATAGTTCTGGCCACAGAGAAGAACTATATGTATAACAAACAAGGAAGAAGGAAACTAGATGATGTCTCTGGTTCTATTTCCATTGACTGTGGCATAGCAGAAGAGGTTACCTACACTGATGAGAAAACTCAGATTCATTACTTTTCAGATGCACAGTTCATTGGCACAGGAATAAGCAAAAACATATCCCTCCAGTTCATTTCTGAAAAAACCCAGAGAACTTTCACAACTGTGAGAAGCTTCCCTGAGGAGAAAAGGAACTGCTACACACTAAAACATCCAGAAGGCAGAAATACTATTTACTTGATAAGAGCTTCTTTCATGTATGGAAACTATGATGACTTGAATAAGCTGCCACAGTTTGATCTCTATGTTGGGGTTAATTTATGGGACTCTGTGATGTTTGACAATGCCACTCATGTTGTAATCAAGGAGATTTTACATGTGCCATCCGTGGATGACTTATATGTTTGTTTGTTGAATACTGATATGGGAACTCCTTTTATATCAGCACTGGAGGTGAGGCACTTTGATGATTCCAGTTATAGAACAAACTCTAAACTATTATCCCTGTATAGACGTTTTGACATTGGCTCAACAACCAATGAAATAGTGAGGTTTGAAGAAGATTCTTATGATCGAATGTGGTATCCTTACGACTTACCAGATTCTACACTTCTCAATACTTCCTTCACCATTGACTCCTTGAACCATACTGCATATCACCTGCCATCAGCGGTAATGCAAACTGCTGTGAGACCCAAAAATGAAAATGATTCCCTGGAATTTGATTTTGACACTGGACATCCTACTTCAGATTCATATGTTTACCTGCACTTTGCTGAAATCGAAGAGCTTAAGGAAAACGAAAGCAGGGCATTCGAAATTACATTGAATGGGAAAATTTTGTCTGAATCTGTGACTCCCAAGTATTTGCTGTCAACTACGATAGATAGTAAACAGGCCATCAGGGGAAATAAGCTCAAGTTCTCTATGTACAAGAAACCAAATTCCAGTCATCCTCCCATTCTAAATGCAATGGAGATTTATATTGTTAAAGAATTTTTGCATTTACCCACAGATTCAGAAGATGTTAAGGCTATCATGTTCATCAAATCACACTACAAGTTGGAGTCTTCGTTGGGTAAATCTTGGCAAGGAGATCCTTGTGCACCATTGAAATACTCTTGGAATGGCCTCAACTGCAGCAATAATGGATATAAATCACCCACAATAACTGCGTTAAACCTAGCCTCCAGTGGATTAGATGGCACAATAATTCCTTCTTTTCTGGAGCTCAAATTCTTAGAATCCTTGGATTTATCGAACAATAGCTTAACAGGACCACTGCCTGATTTTTCAAATCTGCAATACTTAAAGACTCTCAATTTATCAGGGAACAGACTCTCGGGTGAAATTCCTCCAGGTCTCAAGGAAAGATTAGATGATGGTTCCCTTTTGTGGAGAGTGGATGGAAATCCGGATCTCTGCGTGACAGGCCCATGTGAAGAGGACAAAACACATATTATCCGACTTGTTGCAGGCATTCTTTCAGCAATAGTATTTTTCATTGTGTTGGGCATTGTAATGACTATCATTTGGAGAAGGAGATGCAACAGAAAACCAGTTTCAAAGCGGGCTGTTAGATCAAACGAAGAAGTTGTGCTGAAGACAAGTAATAAACAGTTCTCGTACTCTCAGATAATGACTATAACCAATAACTTCGACAAAACAATTGGGAAGGGAGGGTGTGGAGTCGTTTATCTTGGTTCCTTACAGGATGGCACACAAGTTGCTGTCAAAATGCTCTTGCCACAATGCCCTCAAGGATCTCAGCAATTTCAGACTGAGGCTCAACTCTTAATGCGTGTGCATCACAAGAACTTAGCTTCCTTTCTTGGATACTGTAATGAAGTTGGACACACAGCCATCATCTACGAATACATGACTTATGGGAACTTGGAGCAGTATCTTTCAGATGCCAGGAGAGAGCCATTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATCGAGTACTTGCATCACGGCTGCAAGCCACCAATAATCCATAGAGACATAAAGACTGCAAACATTTTACTGAATGAGAAAATGCAAGCAAAAGTAGCTGATTTTGGTTTCTCAAAACTTTTCTCGGCTGAAAATGGAAGTCATGTATCAACTGTAGTTATTGGCACGGTTGGATATCTTGATCCTGAATACTACATCTCCAGCTGGCTGACCGAAAAAAGCGACGTATATAGTTTTGGCATTGTGCTTTTGGAGCTAATTACTGGGCAGCCAGCTATAAAAAAAGGTCACCAGAACACTCACATTGTGCAATGGGTTAACCACTTTCTTGAAAGGGGAGATATACAACAAATTGTTGATCCAAAGATGCACGGAGATTTTGACTTTGGTTCTATGTGGAAGGCCTTAGAAGCAGCAGTAGCTTGTGTGCCTTCAACCTCTATCCAAAGGCCATCAATGAGTCACATTGTTGCTGAACTGAAAGAGTCCCTAAAAATGGAAGCAACTCGAGAACAAAAAGGCATCAACTCGATTGAAATGAATGTTGTTGATCTTGAAGCTCATTGTGGCCCAGATGCAAGATAG 2718 0.4018 MDGKWRCHWAWCFTLWCVLAYTISEFLGKSIVLATEKNYMYNKQGRRKLDDVSGSISIDCGIAEEVTYTDEKTQIHYFSDAQFIGTGISKNISLQFISEKTQRTFTTVRSFPEEKRNCYTLKHPEGRNTIYLIRASFMYGNYDDLNKLPQFDLYVGVNLWDSVMFDNATHVVIKEILHVPSVDDLYVCLLNTDMGTPFISALEVRHFDDSSYRTNSKLLSLYRRFDIGSTTNEIVRFEEDSYDRMWYPYDLPDSTLLNTSFTIDSLNHTAYHLPSAVMQTAVRPKNENDSLEFDFDTGHPTSDSYVYLHFAEIEELKENESRAFEITLNGKILSESVTPKYLLSTTIDSKQAIRGNKLKFSMYKKPNSSHPPILNAMEIYIVKEFLHLPTDSEDVKAIMFIKSHYKLESSLGKSWQGDPCAPLKYSWNGLNCSNNGYKSPTITALNLASSGLDGTIIPSFLELKFLESLDLSNNSLTGPLPDFSNLQYLKTLNLSGNRLSGEIPPGLKERLDDGSLLWRVDGNPDLCVTGPCEEDKTHIIRLVAGILSAIVFFIVLGIVMTIIWRRRCNRKPVSKRAVRSNEEVVLKTSNKQFSYSQIMTITNNFDKTIGKGGCGVVYLGSLQDGTQVAVKMLLPQCPQGSQQFQTEAQLLMRVHHKNLASFLGYCNEVGHTAIIYEYMTYGNLEQYLSDARREPLSWRQRIQIAVDAAQGIEYLHHGCKPPIIHRDIKTANILLNEKMQAKVADFGFSKLFSAENGSHVSTVVIGTVGYLDPEYYISSWLTEKSDVYSFGIVLLELITGQPAIKKGHQNTHIVQWVNHFLERGDIQQIVDPKMHGDFDFGSMWKALEAAVACVPSTSIQRPSMSHIVAELKESLKMEATREQKGINSIEMNVVDLEAHCGPDAR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00234 905 CDD STKc_IRAK 609 873 - -
Spst5g00234 905 Pfam Malectin-like domain 58 381 IPR024788 -
Spst5g00234 905 FunFam Leucine-rich repeat receptor-like protein kinase 580 678 - -
Spst5g00234 905 Gene3D Transferase(Phosphotransferase) domain 1 679 898 - -
Spst5g00234 905 ProSiteProfiles Protein kinase domain profile. 603 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00234 905 SUPERFAMILY Protein kinase-like (PK-like) 582 871 IPR011009 -
Spst5g00234 905 Pfam Leucine Rich Repeat 466 486 IPR001611 GO:0005515
Spst5g00234 905 Pfam Leucine Rich Repeat 489 508 IPR001611 GO:0005515
Spst5g00234 905 Gene3D - 223 382 - -
Spst5g00234 905 FunFam Leucine-rich repeat receptor-like kinase 393 528 - -
Spst5g00234 905 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Spst5g00234 905 PRINTS Leucine-rich repeat signature 486 499 - -
Spst5g00234 905 PRINTS Leucine-rich repeat signature 466 479 - -
Spst5g00234 905 SMART serkin_6 603 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00234 905 Pfam Protein tyrosine and serine/threonine kinase 605 818 IPR001245 GO:0004672|GO:0006468
Spst5g00234 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Spst5g00234 905 Gene3D Ribonuclease Inhibitor 393 515 IPR032675 -
Spst5g00234 905 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 679 884 - -
Spst5g00234 905 SUPERFAMILY L domain-like 418 506 - -
Spst5g00234 905 Gene3D Phosphorylase Kinase; domain 1 585 678 - -
Spst5g00234 905 PANTHER OS07G0107800 PROTEIN-RELATED 56 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00234 Spst-Chr5 2054655 2058916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00234 48 905 Receptor kinase-like Gene Family AT2G19210 46.782 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Spst5g00234 Malectin_like 2.8e-107 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00234 - - gmx:100791717 1570.06