Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00233 ATGAATATCAATAGCACAAAAGCACTTCTTGTTGTGCTCTTTGCATTTGTCTTCTTGGCATGGGGCAATGCACAAAATACCCTTGTGCCAGCAATCATAACATTTGGTGACTCAGCCGTGGATGTTGGGAATAACGATTATTTGCCTACCCTTTTCAAGGCAAACTACCTTCCTTATGGAAGGGACTTTGTCAACCATCAACCCACTGGGAGGTTCTGCAATGGGAAACTAGCGACTGATATTACTGCTGAAACACTTGGTTTCAAGAGTTTTGCACCTGCATATCTTAGCCCTCAGGCTTCAGGGAAGAATCTTCTTATTGGAGCAAACTTTGCTTCAGCAGCCTCTGGTTATGATGAAAAGGCTTCTATTTTGAATCATGCGATTCCATTGTCTCAACAGTTAAAATATTACAAGGAATATCAAGGCAAGCTAGCCAAGGTTGCTGGCGGTAAAAAAGCAGCATTCATCATTAAGGATGCGCTGTACATATTGAGTGCTGGCAGCAGTGATTTTGTGCAAAACTATTACGTCAATCCTTTGATCAATAAAGCCTTAACTCCTGATCAGTATTCTGAATACCTTGTGGGTGCATTTTCAAGCTTTGTTAAGGACTTGCATAAATTGGGAGCCAGGAAAGTTGGAGTGACTTCACTCCCACCTCTTGGCTGCCTACCTGCTGCAAGAACTTTGTTTGGTTTCCATGAGAGTGGTTGTGTATCGAGGATCAACAATGATGCTCAGGGATTTAACCAGAAAATCAAGTCAGCTGCAGCAAATCTCCAAAAGAAACTTCCTGGTCTTAAGATTGCTGTCTTTGATATTTACAAACCTCTTTATGACCTTGTTCAGTCCCCTTCAAAATTTGGTTTTGCCGAGGCAAGAAAAGGTTGTTGTGGTACCGGAATAGTGGAGACAACATCTTTATTGTGCAATCCAAAATCACCAGGAACTTGTTCCAATGCAACTCAATATGTGTTTTGGGACAGCGTCCATCCTTCACAAGCTGCTAACCAAGTTTTAGCCGATGCATTGATTTTACAAGGTATAGCCCTTATCACTTAA 1065 0.4169 MNINSTKALLVVLFAFVFLAWGNAQNTLVPAIITFGDSAVDVGNNDYLPTLFKANYLPYGRDFVNHQPTGRFCNGKLATDITAETLGFKSFAPAYLSPQASGKNLLIGANFASAASGYDEKASILNHAIPLSQQLKYYKEYQGKLAKVAGGKKAAFIIKDALYILSAGSSDFVQNYYVNPLINKALTPDQYSEYLVGAFSSFVKDLHKLGARKVGVTSLPPLGCLPAARTLFGFHESGCVSRINNDAQGFNQKIKSAAANLQKKLPGLKIAVFDIYKPLYDLVQSPSKFGFAEARKGCCGTGIVETTSLLCNPKSPGTCSNATQYVFWDSVHPSQAANQVLADALILQGIALIT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00233 354 Pfam GDSL-like Lipase/Acylhydrolase 32 344 IPR001087 GO:0016788
Spst5g00233 354 CDD SGNH_plant_lipase_like 30 346 IPR035669 -
Spst5g00233 354 SUPERFAMILY SGNH hydrolase 32 345 - -
Spst5g00233 354 PANTHER GDSL ESTERASE/LIPASE EXL3 15 345 - -
Spst5g00233 354 Gene3D SGNH hydrolase 22 349 IPR036514 -
Spst5g00233 354 FunFam GDSL esterase/lipase APG 21 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00233 Spst-Chr5 2052485 2053915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00233 5 346 Pollen Coat Proteome AT1G75910 34.493 1.79e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00233 - - gmx:100795716 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00233 5 2052485 2053915 Spst5g00233 5 2052485 2053915 ECH
Spst5g00233 5 2052485 2053915 Spst4g02297 4 63708465 63710549 PCT