Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00226 ATGTCTTGGCAAACCTACGTGGATGACCACCTCATGTGCAGTTTCGACGACCATACCCTGGCGGCCGCCGCCATCATCGGCCACGATGGCACTGTGTGGGCGCAGAGCTCCAAATTTCCTGAGTTTAAAGGTGAAGAAATTGAAGCCATTATGAAAGATTTTGATGAACCTGGAAGCCTTGCCCCAACGGGCCTGCTCCTGGGTGATACCAAGTACATGGTCATCCAAGGTGAACCTGGAGCTGTTATTCGCGGCAAAAAGGGTGGTGGTGGGATCACTGTTAAGAAAAGTAATCAAGCTTTGGTGATTGGCATCTACAAGGAACCTCTGGCTCCAGGACAGTGTAACATGATTGTTGAGAGGTTGGGAGATTATTTGATTGAGCAAGGCCTCTAG 396 0.4975 MSWQTYVDDHLMCSFDDHTLAAAAIIGHDGTVWAQSSKFPEFKGEEIEAIMKDFDEPGSLAPTGLLLGDTKYMVIQGEPGAVIRGKKGGGGITVKKSNQALVIGIYKEPLAPGQCNMIVERLGDYLIEQGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00226 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 1 13 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Spst5g00226 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Spst5g00226 131 CDD PROF 2 130 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Spst5g00226 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Spst5g00226 131 SMART prof_2 1 131 IPR005455 GO:0003779
Spst5g00226 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Spst5g00226 131 FunFam Profilin 1 131 - -
Spst5g00226 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Spst5g00226 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00226 Spst-Chr5 1961346 1962221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00226 1 131 Cytoskeleton Gene Families AT4G29340 73.134 1.11e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00226 K05759 - gmx:100809393 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00226 5 1961346 1962221 Spst5g00226 5 1961346 1962221 ECH