Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00225 ATGGGCAAAGCTACCAGATGGTTGAAGGGTTTGTTGGGAATGAAGAAAGAGAGGGACTGCTGTGGCTATTCTGGCTCACTGGCTCTGGCCAAGAGGGAAAAGAAACAATCGGAGAAGGATGAAGAGAGTCACATTACACCATCGGCCATCAATCGTACTAGGCACACATCCTATGTTGCCAAAAAAGGGTGTGTGAAGGCCACTGGTGTGGCAGTTGTGAAATCAAGAAGGTGTGACAGAGACACCTTGCTAATTGGAAGCAGGGAGGGCTGGGCTGCTGTGTTGATTCAATCCTTTTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTGGTTAAAATACAGGCTCTTGTTAGAGGGTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTCACAGTGTGCAAGCTATGATAAGAGCTCAAGCTGTTGCTCTATCAGTGCGAGCTCGTCGTTCCTTGGACAAGGAGAATAGATTTCATCCAGAATCTCCTTCCAGAAAATATGTGCAACGGTTTGATGAAACAAGAAATTATCAATCACATAAAAGAAGGGTATCCATATATTCTAAGGCACCCTTGAATCGGTTTGATGAGAGCTCAAAAGTTGTCGAGGTGGACACTCACATGCCCCATTCAAGATGTAGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCATCGTCTCTTCCTTATCCAGTTCAAGGTCGAATCTCACTTCATGAAAGCCAGCACCCTCATGAGTTTGAATGGTTCTTCAACCTTGATGAAGGTAACAAGTTCTCCACAGCACACAACACGCCTCGTTTACCAAAATGCATGATACCAGCTACTCCTCTGAAGAGTGTTTGTGGGGACTCCAATTTCCCTAACTACATGGCCAATACTCACTCTTCTATGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACTCAGAAAAAGGCTTTCAATCAATGAAATGATGGCAGCCAGAAATAGTGTTAGTGGTGTTGGAATGCAATGGCCTTCCAACCCAAAAACTCAAGATTACTATTTCTTTGACAAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAAACCTGCATGGGCCAGATCAACACTTATTGGACTTTGGGCTTTCAATTACCAGGTTACAGGCCCCAAACTTCATTCTCCGGCCCATTTTGCCGCTCATCCGAAATCCATACAAATAAGTTTTATAAAAACCGTTCTTATACCAATGAAAATAAGTTATAACAAAGGAGAGTATGAGTAA 1317 0.4389 MGKATRWLKGLLGMKKERDCCGYSGSLALAKREKKQSEKDEESHITPSAINRTRHTSYVAKKGCVKATGVAVVKSRRCDRDTLLIGSREGWAAVLIQSFFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRAQAVALSVRARRSLDKENRFHPESPSRKYVQRFDETRNYQSHKRRVSIYSKAPLNRFDESSKVVEVDTHMPHSRCRSINTAMSECGEELHYQAMSSSLPYPVQGRISLHESQHPHEFEWFFNLDEGNKFSTAHNTPRLPKCMIPATPLKSVCGDSNFPNYMANTHSSMAKLRSHSAPKQRPELRKRLSINEMMAARNSVSGVGMQWPSNPKTQDYYFFDKLSWLERRANNAKVAGSKPAWARSTLIGLWAFNYQVTGPKLHSPAHFAAHPKSIQISFIKTVLIPMKISYNKGEYE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00225 438 Gene3D - 91 131 - -
Spst5g00225 438 ProSiteProfiles IQ motif profile. 92 117 IPR000048 GO:0005515
Spst5g00225 438 Pfam Protein of unknown function (DUF4005) 270 343 IPR025064 -
Spst5g00225 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 132 IPR027417 -
Spst5g00225 438 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Spst5g00225 438 Pfam IQ calmodulin-binding motif 116 130 IPR000048 GO:0005515
Spst5g00225 438 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Spst5g00225 438 PANTHER IQ-DOMAIN 5-RELATED 1 341 - -
Spst5g00225 438 SMART iq_5 88 110 IPR000048 GO:0005515
Spst5g00225 438 SMART iq_5 111 132 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00225 Spst-Chr5 1955383 1960677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00225 1 347 IQD Protein Family AT3G16490 41.818 4.30e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00225 - - pvu:PHAVU_005G165500g 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00225 5 1955383 1960677 Spst5g00225 5 1955383 1960677 ECH
Spst5g00225 5 1955383 1960677 Spst4g02310 4 63849309 63853726 PCT