Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00223 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGAGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCGGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCGCCTGGTGAGGAGTGGTCTCTCGGTGGTAAAATGAAGAACACCAACACAGAAAGAGAAGAATCTCTTCTCTCTCTTGGGTGCTTCCCTTCTTCGAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCGTGGCCCAACTACCACCACCAGGGTAACAACAAAGCTTCTTCACCGTTTCTTCAGTTAACATCAACCCCACCTGTGATGGGAAAAGAGGCTTCACAAAACTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGGTGGTGGTGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACATCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCGTTCAGGAAGAACCTTGCAAGCAGCAGCGCCTCTAAGGCACCTCCTGAGTCACAGCCTGAGCAGCATAACAAGGTTGCTGGTAAAAAACCTGTTGATACCTATGGTAATAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAACGCTTACGACAGCTATGAAAGTCTCTCTTCTGCAGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAGCAAGCAGGAGGAAGAGAAAGCAATCACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTACTTTTACCCTTGGCGGTAAGCAAGAGAAGATATCACTTGACTCAGCAATGAAATGA 1032 0.4758 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEEWSLGGKMKNTNTEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHHQGNNKASSPFLQLTSTPPVMGKEASQNCCPKVVELQNGGGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKAPPESQPEQHNKVAGKKPVDTYGNKGLFVKINMDGVPIGRKVDLNAYDSYESLSSAVDELFRGLLAAQRDSSAGGVHSKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSTFTLGGKQEKISLDSAMK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00223 343 ProSiteProfiles PB1 domain profile. 217 326 IPR000270 GO:0005515
Spst5g00223 343 Gene3D - 212 332 - -
Spst5g00223 343 MobiDBLite consensus disorder prediction 143 167 - -
Spst5g00223 343 MobiDBLite consensus disorder prediction 140 210 - -
Spst5g00223 343 MobiDBLite consensus disorder prediction 22 43 - -
Spst5g00223 343 Pfam AUX/IAA family 38 326 IPR033389 -
Spst5g00223 343 MobiDBLite consensus disorder prediction 181 197 - -
Spst5g00223 343 MobiDBLite consensus disorder prediction 1 62 - -
Spst5g00223 343 SUPERFAMILY CAD & PB1 domains 211 318 - -
Spst5g00223 343 FunFam Auxin-responsive protein 212 333 - -
Spst5g00223 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00223 Spst-Chr5 1941520 1944201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00223 221 332 B3 DNA Binding Superfamily AT4G23980 33.929 6.99e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst5g00223 AUX_IAA 1.9e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00223 K14484 - gmx:100804593 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02313 4 63873972 63876365 Spst5g00223 5 1941520 1944201 ECH
Spst5g00223 5 1941520 1944201 Spst5g00223 5 1941520 1944201 ECH
Spst5g00223 5 1941520 1944201 Spst4g02313 4 63873972 63876365 PCT