Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00219 ATGAATCTTCTAGCCAAACCCCGTTGGAGGTTGCTACTATTACATATAATTCTGCTTCGTCTTCATTGCTCAAGTTCTTATCCCATGCCAGCGATCTGCACCGACACAAGCCGCGTTTGCACTTCTTTCTTGGCATTTAAGCCTAAACCAAACCAAACCATGGCTGTCGTACAAAGCATGTTTGACGTGTTGCCCAGTGAGATCACCGTTGAAGGCAATGGCTGGGATTATATATTCATCAGGAAAAACTGTTCTTGTGATGCTGGTATGAAGAAGTACGTATCTAACACCACACTCACAGTGAAATCCAACGGAGGGTATGTGCATGATTTGGTGATAGAAGCCTATGATAGCCTTGCTCTCTTGCCCAACACGACACATTCGGCAAGAAAAGATCATGGTGTCATACCACTGAACTTGTTTTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATCAGAGATGGGGATAGTGTTGAATCACTAGCAAGCCGGTTCGGAGTTAGTATGGATAGCATTGAGACAGTGAATGGCATTGACAATCCTGATGGCTTCACTGTTGGTTCTCTCTATTATATACCTTTAAATTCTGTTCCTGGTGAGCTTTACCACTTGAAGAATGACACTCCTCCAGTTCCAGTCCCTTCCACATCTGTTGATGAATTTTCAGCTGACCAAATCAACCGGAAGGCTAGTGTACCCCATGAATGGATCGTAGGAGGTTTTGGGGTTGGTCTTGCTCTGATAATATTAAGCATTATTGTGTGTGTGTTCCTGAGATCACCCAATTGTTTGGTTGAAGCCAGAAATAATGCAAAAAATTCTGCAGGAAAGATTTCTAATAAGTTCTATGTTTTTGGCAATCCAAATTTATTTTGTGGATGTGGCAAACCTGTGAACCAGAAGCAAACTGATGGTGAATCCAGTAGTCAGCAAATTACCGTTACCAAAGCATCATCTCTAATACCTGACATGTTGAACATGGATAAGCCTACAGTTTTTTCATATGAAGAGATTTTTGGCTCAACCGATGGTTTCTGTGACTCAAATCTACTTGGGCACAGAACATATGGTTCTGTTTACTATGGTCTCCTGCGTGGCCAGGAAGTCGCTATTAAAAGGATTACAGCTACTAAAACTAAAGAATTTATGTCAGAGATAAAAGTTCTCTGCAAGGTTCATCACGCTAATCTGGTAGAATTGATCGGCTATGCGGCTGGTCATGATGATTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCACTTGCATGATCCTCAAAATAAGGGTCATTCATCTCTTTCTTGGATCACAAGGGTTCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACGTACATGAACATACAAAAACTCGCTACGTCCATCAAGATATCAAAACAAACAACATATTACTTGATGCATCCTTTAGAGCCAAGATATCAGATTTGGGGTTAGCAAAACTTGTTGGTAAAACAAATGAGGGAGAAACCCCAGCAACCAAAGTTGTAAATGCATTTGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTACGCATTTGGTGTTGTTCTTTTTGAGATTATGTCAGGGAAGGAGGCCATTATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAGTTCTTAGGAACTCACCTGATTCCGTGAGCACGTCAAGCACGAGAAACCTCGTTGATCCTATTATGATGGATCTGTACCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCATATTACGCCCTGATATGAAGCAAGTTGTGATTTCGCTCTCACAAATCCTGCTGTCTTCTGTTGAGTGGGAAGCGACTCTTGCTGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1968 0.4228 MNLLAKPRWRLLLLHIILLRLHCSSSYPMPAICTDTSRVCTSFLAFKPKPNQTMAVVQSMFDVLPSEITVEGNGWDYIFIRKNCSCDAGMKKYVSNTTLTVKSNGGYVHDLVIEAYDSLALLPNTTHSARKDHGVIPLNLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNGIDNPDGFTVGSLYYIPLNSVPGELYHLKNDTPPVPVPSTSVDEFSADQINRKASVPHEWIVGGFGVGLALIILSIIVCVFLRSPNCLVEARNNAKNSAGKISNKFYVFGNPNLFCGCGKPVNQKQTDGESSSQQITVTKASSLIPDMLNMDKPTVFSYEEIFGSTDGFCDSNLLGHRTYGSVYYGLLRGQEVAIKRITATKTKEFMSEIKVLCKVHHANLVELIGYAAGHDDFFLIYEYAQKGSLSSHLHDPQNKGHSSLSWITRVQIALDAARGLEYVHEHTKTRYVHQDIKTNNILLDASFRAKISDLGLAKLVGKTNEGETPATKVVNAFGYLAPEYLSNGLATTKSDVYAFGVVLFEIMSGKEAIIQTQGPEKRPLASIMLAVLRNSPDSVSTSSTRNLVDPIMMDLYPHDCVFKMAMLAKQCVEEDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00219 655 Gene3D LysM domain 150 204 IPR036779 -
Spst5g00219 655 Gene3D Phosphorylase Kinase; domain 1 322 421 - -
Spst5g00219 655 ProSiteProfiles Protein kinase domain profile. 350 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00219 655 SMART serkin_6 350 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00219 655 Gene3D Transferase(Phosphotransferase) domain 1 423 642 - -
Spst5g00219 655 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Spst5g00219 655 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 76 649 IPR044812 GO:0019199|GO:0045087
Spst5g00219 655 SMART LysM_2 154 198 IPR018392 -
Spst5g00219 655 FunFam PTI1-like tyrosine-protein kinase 3 422 641 - -
Spst5g00219 655 SUPERFAMILY LysM domain 153 198 IPR036779 -
Spst5g00219 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Spst5g00219 655 SUPERFAMILY Protein kinase-like (PK-like) 324 627 IPR011009 -
Spst5g00219 655 Pfam Protein tyrosine and serine/threonine kinase 355 625 IPR001245 GO:0004672|GO:0006468
Spst5g00219 655 Pfam LysM domain 155 187 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00219 Spst-Chr5 1916854 1921610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00219 30 655 Receptor kinase-like Gene Family AT1G51940 61.705 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Spst5g00219 PK_Tyr_Ser-Thr 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00219 - - vra:106762524 1129.39