Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00215 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGGACGTGCCCGTCGACGCGGGGGGCTGGCGCCGGAGTCAAGCTGTTCGGGGTCAGGCTGACGGATGGATCAATCATAAAGAAGAGCGCCAGCATGGGAAACCTTAACCTCGCCTCCGCACACCACCATTCTTCTTCTCCTTCTTCTTCCAACCTTGCCGCCTCATCCCCCAATCCCAGCTCTCCCTGCTCCGACCCGCCCCTCGAGCCCCACGGTTATTTGTCTGATGACCCCGCGAATGTCTCCACCTTCGCTAACCGCCGCGGAGAAAGAAAAAAAGGTGTTGCATGGACTGAAGAAGAACATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGATTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCCACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCAGGCAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATACGGCTTCAGATCCACCTTCAGTGCCAGAAGAACAAGTGCTGCTTCCACCTTCTGACAATTTGCAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTCTCACTCAAATCCGAATTTGAACCCATGGAAACTACTTCTCAAGAAAATGTGGAACAGACCAATGAAACTATGATGGGATCAAACGGACTGATATCAATGGCTCCTCATGGATTCTTCCCCACGTATTTACCTATTCCGTTTCCCATATGGCCATCAGCTGCAGCTCCATTTGAGGAAGTTAAGGGTGGAGAGATATCCCATCATCAGGTCCACAAGCCAATCCCAGTCATTCCCAGGGAACCTGTCAATGTGGACGAACTTGTGGGAATGTCTCATCTCAGCATTGGGGAAACGCACGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAATTGTTAGGAGAACCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCGGATTTAAAAACTGGCAAGAGCAATGCAATTCAAGCGGTTGGAGCTTTTAAGGTCTGTTGA 1086 0.5 MTRRCSHCSNNGHNSRTCPSTRGAGAGVKLFGVRLTDGSIIKKSASMGNLNLASAHHHSSSPSSSNLAASSPNPSSPCSDPPLEPHGYLSDDPANVSTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDTASDPPSVPEEQVLLPPSDNLQPCNGKSQPSLNLSLKSEFEPMETTSQENVEQTNETMMGSNGLISMAPHGFFPTYLPIPFPIWPSAAAPFEEVKGGEISHHQVHKPIPVIPREPVNVDELVGMSHLSIGETHVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKSNAIQAVGAFKVC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00215 361 SUPERFAMILY Homeodomain-like 106 160 IPR009057 -
Spst5g00215 361 MobiDBLite consensus disorder prediction 53 74 - -
Spst5g00215 361 Gene3D - 110 161 - -
Spst5g00215 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Spst5g00215 361 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Spst5g00215 361 MobiDBLite consensus disorder prediction 53 96 - -
Spst5g00215 361 FunFam transcription factor MYB1R1 110 161 - -
Spst5g00215 361 MobiDBLite consensus disorder prediction 1 21 - -
Spst5g00215 361 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Spst5g00215 361 CDD SANT 111 156 IPR001005 -
Spst5g00215 361 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Spst5g00215 361 PANTHER TRANSCRIPTION FACTOR KUA1 3 257 - -
Spst5g00215 361 MobiDBLite consensus disorder prediction 1 23 - -
Spst5g00215 361 SMART sant 108 158 IPR001005 -
Spst5g00215 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00215 Spst-Chr5 1856119 1859401 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst5g00215 Myb_DNA-binding 9.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00215 - - gmx:778036 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00215 5 1856119 1859401 Spst5g00215 5 1856119 1859401 ECH