Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00214 ATGCACCTTTCCAACATCATTACACTTGCACACTTGCGCACACCCACGCTTTATAAGGTTAGCTGTAGAAGGAGTTTTCTTCGCGTTGCTTGCTTATGTTGTAGTGATCTGTCTTGTGTTGTTGTGCGTAAAAGCGACAACCGCACCACTCTCTCATCTCTCTCCATCATGTTTTCATCAACCAGATGCTCTTTCCTGGTAATTTTCCCTCTCACTTATCTTTTGATTCCACCTTCCCAACTCGCCACATCCAGATTTGCACCATTTCCTGTTATTAGCAACTCAGGGTTAGGTGGGTGTGGCAGAGTGTGTGATGCGCGGAGACAGCGTTCAAGTCCTATGAAGGTGGTGTGTATGACCCCACCCAGCAGGTCGAGTGATAGGAACGGCAGCGTTGTGTTGGAGACGCCGTTGAAAGAATTGAAAAAGGATTCACCGGTTACTGACGTTGACGATAACTCCACCTCCGCCGGTGGCCCTCAAGATGTGTACGGTGAGGATAGGGCGACAGAGGATCAGTTTGTTACCCCTTGGAGTGTCTCCGTAGCTAGTGGTTATACATTGTTGAGAGATCCACACTTCAACAAAGGACTTGCCTTCAGTGAAAATGAGAGGGATGCCCATTACTTGCGGGGTCTTCTTCCCCCAACAGTTATTCCTCAAGAAACTCAGGTAAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGGCTATTTTACAAACTTCTTATTGAACACGTTGAAGAGTTGCTCCCTATTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAACGGATCCTGGGTCTTGGTGATCTTGGTTGTCAGGGGATGGGAATACCAGTAGGCAAACTTTCTTTATATACAGCACTTGGAGGTGTTCGCCCATCAGCTTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTAAAGCAAAGAAGAGCAACTGGACAGGAATATGCTGAGCTTTTGCACGAATTTATGACAGCAGTCAAACAAACTTATGGGGAAAAGGTCTTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTCGAGAAATATAGATCAACACATCTGGTATTTAATGATGATATTCAGGGAACAGCATCTGTTGTCCTTGCTGGATTAGTTGCTGCTCTGAAATTGGTTGGTGGTAACTTAGCTGATCACAGATTCTTGTTCCTCGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCTCGCAAAGACTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAACAATCTTTTAGATGCTGTTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCGGGACAAGGAAGAACTTTTACTAAAGAGGTGATTGAGGCTATGGCCTCTATCAACAAGAAACCTATTATTCTTTCTCTGTCCAACCCTACGTCACAGTCAGAATGCACTGCTGAAGAAGCTTACAAATGGAGCCAGGGGCGTGCCATTTTTGCAAGTGGGAGCCCATTCCCCCCAGTTGAGTATGATGGAAAAGTGTTTGTGCCTGGCCAGTCCAACAATGCTTACATATTTCCTGGATTCGGTCTCGGTTTGATAATGTCTGGGACAATTCGCGTGCATGATGACCTGCTTCTGGCTGCATCTGAGGCTTTGGCTGCACAAGTGGGGCAAGAGAACTTTGATAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCACATATAGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACCCGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCAGAGAGCTGTATGTACACCCCATCCTACAGAACCTACCGGTGA 2175 0.451 MHLSNIITLAHLRTPTLYKVSCRRSFLRVACLCCSDLSCVVVRKSDNRTTLSSLSIMFSSTRCSFLVIFPLTYLLIPPSQLATSRFAPFPVISNSGLGGCGRVCDARRQRSSPMKVVCMTPPSRSSDRNGSVVLETPLKELKKDSPVTDVDDNSTSAGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFSENERDAHYLRGLLPPTVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIEHVEELLPIVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELLHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMASINKKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYDGKVFVPGQSNNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVGQENFDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRTYR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00214 724 SMART malic_2 249 430 IPR012301 GO:0004471
Spst5g00214 724 Gene3D - 438 724 - -
Spst5g00214 724 SMART Malic_M_2 440 693 IPR012302 GO:0051287
Spst5g00214 724 Pfam Malic enzyme, NAD binding domain 440 692 IPR012302 GO:0051287
Spst5g00214 724 ProSitePatterns Malic enzymes signature. 436 452 IPR015884 GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 255 279 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 411 429 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 467 483 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 436 452 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 570 586 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 351 373 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 PRINTS Malic enzyme signature 315 344 IPR001891 GO:0004470|GO:0004471
Spst5g00214 724 MobiDBLite consensus disorder prediction 143 168 - -
Spst5g00214 724 PANTHER MALIC ENZYME-RELATED 153 722 - -
Spst5g00214 724 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 440 723 IPR036291 -
Spst5g00214 724 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 163 439 IPR046346 -
Spst5g00214 724 Gene3D - 183 437 IPR037062 GO:0004471
Spst5g00214 724 FunFam Malic enzyme 183 437 - -
Spst5g00214 724 FunFam Malic enzyme 438 724 - -
Spst5g00214 724 Pfam Malic enzyme, N-terminal domain 249 430 IPR012301 GO:0004471
Spst5g00214 724 CDD NAD_bind_1_malic_enz 440 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00214 Spst-Chr5 1847116 1852583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00214 K00029 - gmx:100791514 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02318 4 63906552 63915374 Spst5g00214 5 1847116 1852583 ECH
Spst3g00882 3 12255756 12261269 Spst5g00214 5 1847116 1852583 ECH
Spst9g00988 9 8788240 8793202 Spst5g00214 5 1847116 1852583 ECH
Spst5g00214 5 1847116 1852583 Spst5g00214 5 1847116 1852583 ECH
Spst5g00214 5 1847116 1852583 Spst9g00988 9 8788240 8793202 ECH
Spst5g00214 5 1847116 1852583 Spst4g02318 4 63906552 63915374 PCT