Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00202 ATGACCGATAAACTGTGTCACGAAACTCCAAGCAGTAGCCCCATCAATTCCTCCTCTTCAAAACTCCATAAAACAGAGACCCCAAAACAGAGCAAGCCCAAGAGAAACAGAGACCCCACCAAGCATCCCCTTTACCACGGCGTACGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGCCACGCCCGAAATGGCGGCGCGTGCGCACGATGTTGCGGCTCTGACAATTAAGGGCCACACGGCGATTCTCAACTTCCCTAACACAGTAAACATGCTTCCTAGACCTGCCACGCGTGCCCCACGTGACATCCAAGTGGCCGCCGCGGAAGCCGCCGCGATGGTGGAGTTGGACCGCGAGTGTTTGAAGAAGGAGGAGGAAGAGCTGAGCGAGATTGTGGAACTGCCGAACTTAGAAGAGAGCTTGAAATCCGTGGAGTCGAGAAGTGAGTTCGCAGTTCTTGAGTCTGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGCGAGATGATGGTCGGCGAACATGACTGTGGATTCTTCCATTTTCAGAGCGACCATCATCAAACATGTTCTGTTTAG 630 0.5238 MTDKLCHETPSSSPINSSSSKLHKTETPKQSKPKRNRDPTKHPLYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGHTAILNFPNTVNMLPRPATRAPRDIQVAAAEAAAMVELDRECLKKEEEELSEIVELPNLEESLKSVESRSEFAVLESVDSWLYPPMAVGSICEMMVGEHDCGFFHFQSDHHQTCSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00202 209 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Spst5g00202 209 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Spst5g00202 209 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Spst5g00202 209 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 MobiDBLite consensus disorder prediction 25 45 - -
Spst5g00202 209 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 MobiDBLite consensus disorder prediction 1 45 - -
Spst5g00202 209 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 156 - -
Spst5g00202 209 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Spst5g00202 209 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00202 Spst-Chr5 1759173 1759802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00202 16 178 AP2-EREBP Transcription Factor Family AT5G11590 52.880 3.38e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst5g00202 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00202 K09286 - gmx:100784419 313.153