Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00192 ATGTCTCGAGCATTGGAACATGATTACATAGGGTTGGCAGAGAAACCGCCAACGGACGGAGGCTCTGACAAACCTCCTTCTTCTTCTTCTTCATCATCATCTTCGTCTTCTGAGGATGGTAAAACCTTATCACTCAACTTGAAGGAGACGGAACTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCGAGAGAGAAAATCAGGTGCTGGACTCTGTCTTTTTGGCAAAGAGTTGCAGAACAAGAATAATGTTTGTTCAGTTGCAAGCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGTGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCTAGAGGAGGCATTGTTGGGAAGCCTCTTATTGGTTTAGACACTCAGACTAATACCCCACTGGCTAACACCTCCATCAAAGAGGTTGCTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAGAAGAATGATCAGGTTTCTGCAACAAATGGTCATGCCAGTGCTCCATCTGCAAAGGCACAAGTCGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACGATGGCATCTAATTTGTCAAAGAACAATGATGAAGGCGAGGGAAAACCTGGGCTTGGTTGTCTCTATGTAAAAGTCAGTATGGCTGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACCTACAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGTTTTACCATCGGTCAATGCAATTCTCCTGGACTTCCTGGTAAAGATGGACTAAGTGAGAGCTGTTTGAGGGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGAATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAGAAATCTAGAAGCCGAAACTAA 1020 0.4559 MSRALEHDYIGLAEKPPTDGGSDKPPSSSSSSSSSSSEDGKTLSLNLKETELRLGLPGCESRERKSGAGLCLFGKELQNKNNVCSVASPLKAGAKRGFSDAIDTSSGKRCSSVTDGSQGAALFSPRGGIVGKPLIGLDTQTNTPLANTSIKEVAAVPQSAKPVQEKNDQVSATNGHASAPSAKAQVVGWPPIRSFRKNTMASNLSKNNDEGEGKPGLGCLYVKVSMAGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESCLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSRN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00192 339 Gene3D - 216 332 - -
Spst5g00192 339 MobiDBLite consensus disorder prediction 1 47 - -
Spst5g00192 339 FunFam Auxin-responsive protein 214 331 - -
Spst5g00192 339 ProSiteProfiles PB1 domain profile. 219 321 IPR000270 GO:0005515
Spst5g00192 339 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 326 IPR003311 GO:0005634|GO:0006355
Spst5g00192 339 MobiDBLite consensus disorder prediction 22 43 - -
Spst5g00192 339 SUPERFAMILY CAD & PB1 domains 219 320 - -
Spst5g00192 339 Pfam AUX/IAA family 49 330 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00192 Spst-Chr5 1714971 1717013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00192 221 333 B3 DNA Binding Superfamily AT1G19850 32.174 3.77e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst5g00192 AUX_IAA 8.3e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00192 K14484 - gmx:100804423 555.058