Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00181 ATGGGCGCTGACATGTCCAACAATCCACCTCCCACTTCTCACGCCAAAGACTTCTTTGCCTCCCCAGCTCTCTCTCTCAGCCTTGCGGGAATTTTTCGCCATGCTGGTGTGGCGGCGGACGCTGAAGCTGCCACTTCGAACATGGAGGTGGAGGAGTGGGAAGAAGGGAGCGGAGGAGGTGAAAGGCTAGAAGAGATTAGCAGCGAGAATTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGCGAACACGAGGATGCTGATGCTGATGGGGACAAGACCAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCTCCGAGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAAGAGAAAAATAAATCCTTACGCGAGACAGTAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCAACCACAAGCAGAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCGGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCTGGATCAACGTCCCCTTCATGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATTGACAATTCAAGGATAATGGATATAGTGAACCAAGCAATGGAGGAACTGATCAAGATGACTACCATGGGGGAACCATTATGGCTTCGTAGCTTCGAGACTGGTCGCGAAATACTTAACTATGATGAATATGTGAAGGAGTTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTGGATCTCCCACGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAAGAAATGTTTCCATGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAACAGTGGGCGATCGTTGATGTATCCATCGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAGGACAAGTCCAATGGCCATTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATTCCATGTATCGCACCATTGTGAACAGTGGCCTTGCCTTTGGGGCAAAGCATTGGATTACGACTCTACAACTTCAGTGTGAACGTCTAGTTTTTTTCATGGCAACTAATGTTCCAATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCGTCAAGCTTCCACACATGGACTAAGGTTACTAGCAAAACCGGGGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCTGTTTGTTCTGTATGGTTGCCAGTCTCACCAAATGTTCTGTTTGATTTCTTGAGGGATGAAACACGCCGAAATGAGTGGGATATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCCGTAACCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGGTACTACAAGATAGCTGCACGAATTCTTATGAGTCAATGGTGGTGTATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCGAGCAATCTTGCCATACTTCCTTCGGGATTCTCTATTATTCCTGATGGCCTCGAGTCAAGGCCATTGGTGATTACTTCAAGGCAGGAAGAAAAATACACCGAGGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTGACTAATGCATCTCCCACAGCCAAGTTAACAGTGGAGTCTGTGGACTCGGTCAACACTCTTGTTTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGAGGGTTAG 2271 0.4518 MGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAADAEAATSNMEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDADADGDKTKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKSLRETVNKACCPNCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQAMEELIKMTTMGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGAKHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSPNVLFDFLRDETRRNEWDIMSSGGTVQSIANLSKGQDRGNAVTIQTIKLKENSVWVLQDSCTNSYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNASPTAKLTVESVDSVNTLVSCTLRNIRTSLQCEEG 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00181 756 MobiDBLite consensus disorder prediction 39 113 - -
Spst5g00181 756 SMART HOX_1 102 164 IPR001356 GO:0003677
Spst5g00181 756 Pfam START domain 273 495 IPR002913 GO:0008289
Spst5g00181 756 Coils Coil 210 230 - -
Spst5g00181 756 ProSiteProfiles START domain profile. 262 498 IPR002913 GO:0008289
Spst5g00181 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 751 IPR042160 -
Spst5g00181 756 FunFam Homeobox-leucine zipper protein HDG1 87 176 - -
Spst5g00181 756 Gene3D - 307 492 IPR023393 -
Spst5g00181 756 Gene3D - 89 173 - -
Spst5g00181 756 CDD homeodomain 107 158 IPR001356 GO:0003677
Spst5g00181 756 SUPERFAMILY Homeodomain-like 94 161 IPR009057 -
Spst5g00181 756 SUPERFAMILY Bet v1-like 265 495 - -
Spst5g00181 756 Coils Coil 159 186 - -
Spst5g00181 756 FunFam Homeobox-leucine zipper protein GLABRA 2 271 494 - -
Spst5g00181 756 Pfam Homeodomain 103 158 IPR001356 GO:0003677
Spst5g00181 756 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Spst5g00181 756 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Spst5g00181 756 CDD START_ArGLABRA2_like 267 494 - -
Spst5g00181 756 SUPERFAMILY Bet v1-like 517 717 - -
Spst5g00181 756 SMART START_1 271 495 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00181 Spst-Chr5 1634481 1640091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00181 66 755 Homeobox Transcription Factor Family AT1G79840 66.952 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst5g00181 START 5.2e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00181 K09338 - gmx:100809926 1346.64