Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00172 ATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTGAGGTGCGGCCGCCGTAGTTTCCACCTCCAGAAGAGTCGCTGCGCCGCTTGCGCTTTCCCCGCTGCTCGCAAGAGGAAATATAACTGGAGTGTCAAGGCAATCCGCAGAAAGACCACCGGAACTGGCAGGATGAGGTACTTGCGTAACGTGCCTCGCCGATTCAAGAGTGGGTTCAGAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCAGCTGCTACTGCTTAA 288 0.5556 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGAAATA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00172 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Spst5g00172 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Spst5g00172 95 FunFam Ribosomal protein L37 1 88 - -
Spst5g00172 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Spst5g00172 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 94 - -
Spst5g00172 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Spst5g00172 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00172 Spst-Chr5 1595204 1595833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00172 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.368 2.17e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00172 K02922 - csv:101221537 176.022