Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00169 ATGGAATTTTGGCCAGAGTTTCTCGCGAGCAGCACCGGAAAAGAGTTCGTAGCAGGAGGATTTGGAGGCACTGCAGGCATAATCTCTGGTTACCCATTAGACACGCTCCGTGTGATGCAGCAGAACTCCTTCAACACTCGCTCTGCCTTCACCATCCTCAGAAATGTGGTGGCCAAGGAAGGACCAACCGCTCTGTACCGCGGCATGGCTGCACCTCTGGCCTCTGTTACCTTTCAGAATGCTATGGTTTTCCAAATTTACGCAATTCTTTCGAGGGCATTTAGTTCGTCCGTTTCGGTGAACGACCCTCCTTCTTACAAGGGTGTGGCTTTAGGAGGATTTTGCAGCGGTGCTATACAGAGTATGTTGCTGTCCCCTGTTGAGTTAGTAAAAATTCGGCTTCAGCTGCAGAACACAGGTGAATCCATAGAAACCCAAAAAGGTCCTATGAGGGTGGCCAAAAACATATGGAAAATAGAGGGCCTTCGCGGCATTTATCGAGGCCTTGGCATCACCATGCTAAGAGATGCACCTGCACATGGGCTTTACTTTTGGACATATGAATATGCAAGGGAGAAACTTCACCCAGGTTGTAGAAGAAGCTGTAAAGAGAGCTTGAATACTATGCTGGTATCAGGAGGATTAGCTGGGGTAGTGAGTTGGGTTTTCAGCTACCCTTTAGACGTTATCAAGACAAGATTGCAGGCTCAAACACTTTCTTCACAAAAATACAGAGGCATTTTGGATTGCCTTGGGAAGAGTGTTAGAGAAGAAGGATATGTGGTGCTGTGGAGGGGTTTAGGAACTGCAGTTGCCAGAGCGTTTGTGGTGAACGGTGCTATATTTTCTGCTTATGAGATCACTCTAAGAGAGGCAAAACAAAGATGCACGAAAAGAAAGAAGAGGCCGGAAAGACTGGGCCCAAACAAAAGCACGGTGCCGCGCCGCAAATTGTTACGCAGGGTTGCCATCACCAAGCAAACCCGACCCGTAAAGGATGCCACGTGGCAGAGCCTTTCAAAAGGACGTACGCAGAAGACCACAAGTTTTGAATGTGAAGCCAAGCGCGCAACGATAAATGGACACAAAACAGTGGCAGTCCCCACCCATGTGGGACGGGACAAGTTCAAAAAACCACGGGACCTACCCCCCACCCTACGACGTCGTTTCACTGCCTAG 1179 0.4885 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTRSAFTILRNVVAKEGPTALYRGMAAPLASVTFQNAMVFQIYAILSRAFSSSVSVNDPPSYKGVALGGFCSGAIQSMLLSPVELVKIRLQLQNTGESIETQKGPMRVAKNIWKIEGLRGIYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCKESLNTMLVSGGLAGVVSWVFSYPLDVIKTRLQAQTLSSQKYRGILDCLGKSVREEGYVVLWRGLGTAVARAFVVNGAIFSAYEITLREAKQRCTKRKKRPERLGPNKSTVPRRKLLRRVAITKQTRPVKDATWQSLSKGRTQKTTSFECEAKRATINGHKTVAVPTHVGRDKFKKPRDLPPTLRRRFTA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00169 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Spst5g00169 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Spst5g00169 392 MobiDBLite consensus disorder prediction 371 385 - -
Spst5g00169 392 FunFam Mitochondrial arginine transporter BAC2 11 302 - -
Spst5g00169 392 MobiDBLite consensus disorder prediction 371 392 - -
Spst5g00169 392 SUPERFAMILY Mitochondrial carrier 12 286 IPR023395 -
Spst5g00169 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Spst5g00169 392 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Spst5g00169 392 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Spst5g00169 392 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Spst5g00169 392 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Spst5g00169 392 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Spst5g00169 392 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
Spst5g00169 392 Gene3D Mitochondrial carrier domain 10 305 IPR023395 -
Spst5g00169 392 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Spst5g00169 392 Pfam Mitochondrial carrier protein 209 290 IPR018108 -
Spst5g00169 392 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00169 Spst-Chr5 1581093 1585013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00169 1 290 Antiporters AT1G79900 70.000 1.92e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00169 K15109 - gmx:100812034 534.258