LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g00154	ATGGGTGTGAACTCTAACAGAGTAGAACACTTTGATAACCATGAAACCATTTTCAGAATCCAAACCCAGACACCATCTTTAGAAATTCATGCAGTGCAGTTGCCACCACAAAGAACCACCCTCCACAAACTCAGACACAGAGTCTCTGAAATCTTCTTCCCCGACGACCCTCTCTACCGTTTCAAGAACCAAACTTGCTTCAAAAAGTTCATCCTAGCACTTCAATACTTCTTCCCCATTTTTCAATGGGCCCCAAACTACAACCTCACCCTTCTCCGCTCTGATCTCATATCTGGCCTCACCATTGCCAGCCTCGCCATTCCTCAGGGGATCAGTTATGCTAAGCTTGCAAACTTGCCACCTATTATTGGACTATATTCAAGTTTTGTGCCGCCATTGATATACTCTCTGCTTGGAAGTTCTAGACATCTTGGTGTTGGACCTGTTTCTATTGCGTCTTTGGTCATGGGATCAATGTTAAGTGAAAAAATCTCTTACAGACAAGACCCTATTCTGTATCTTGGAATGGCTTTCACAGCCACTTTCTTTGCTGGTGTGTTCCAAGCTTCTCTGGGTATACTAAGATTAGGGTTCGTAATTGATTTTCTATCGAAGGCAACTCTGGTTGGATTCACAGGAGGTGCTGCCATTATTGTGTCACTGCAGCAGCTGAAAGGTTTACTTGGAATAGTGCACTTTACCAGCAAGATGCAAATAGTTCCTGTGATGATCTCTGTTTTCAACCAAAGGCACGAGTGGTCATGGCAAACCATTCTTTTGGGATTCGGCTTCCTGGCATTCCTGATGACAACAAGACACATTAGCTTGAGGAAACCAAAACTCTTCTGGGTTTCAGCCGCTGCCCCATTGACATCAGTTATTCTGTCAACCATTTTAGTCTTTCTTCTGAAAAATAAGACTCATCAAATTTCAATTATTGGACACTTACCAAAGGGAGTTAATCCACCTTCATCAAACATGTTATTCTTCAATGGTCCCTATTTGGCTCTTGCTATCAAAACTGGAATTATCACAGGGATCTTATCTCTGACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTCAAGAACTACCAGGTCGATGGAAACAAAGAAATGATGGCTATTGGTCTAATGAACATAGCTGGCTCTTGTTCTTCATGTTATGTTACAACAGGATCCTTTTCTAGATCAGCTGTTAACTACAATGCCGGAGCACAGACAACAGTTTCAAATATAATCATGGCTGCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTCTGTTCAACTATACACCAAATGTTGTCTTAGCGGCCATTATCATCACTGCTGTGATTGGGCTAATAGATTATCAATCTGCGTATAAATTGTGGAAGGTTGACAAACTTGATTTCTTGGCATGTCTGTGCTCCTTTTTTGGGGTTCTGTTCATCTCAGTGCCCCTAGGCCTTGGTATAGCGGTTGTCATATCAGTCATCAAGATCCTGCTTCATGTTACTCGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACTCTAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGAGTTCCTTCATTCCTCATTTTGGCTGTTGAGTCTCCAATCTATTTTGCTAACTCAACATATCTTCAAGAAAGGATACTGAGGTGGGTCCGAGAAGAGGAAGAACATATAAAAGCTAATGATGGAGCTTCATTGAAGTGCATAATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGGCTTGACACTTTATGTGAACTTAGAAAGATGCTGGAGAAGAGATCACTTCAGCTTGTGTTGGCAAATCCTGTGGGAAATGTGGTGGAAAAATTGCACAAATCAAAAATTTTGGATTCCTTTGGATTAAAAGGAGTCTATCTCACAGTAGGTGAAGCTGTGGCTGACATTTCCTCGATCTGGAAAGCTCAGCCTTGA	1965	0.4168	MGVNSNRVEHFDNHETIFRIQTQTPSLEIHAVQLPPQRTTLHKLRHRVSEIFFPDDPLYRFKNQTCFKKFILALQYFFPIFQWAPNYNLTLLRSDLISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLSEKISYRQDPILYLGMAFTATFFAGVFQASLGILRLGFVIDFLSKATLVGFTGGAAIIVSLQQLKGLLGIVHFTSKMQIVPVMISVFNQRHEWSWQTILLGFGFLAFLMTTRHISLRKPKLFWVSAAAPLTSVILSTILVFLLKNKTHQISIIGHLPKGVNPPSSNMLFFNGPYLALAIKTGIITGILSLTEGIAVGRTFASLKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTTVSNIIMAAAVLVTLLFLMPLFNYTPNVVLAAIIITAVIGLIDYQSAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVVISVIKILLHVTRPNTLVLGNIPGTLIFHNINQYKEASRVPSFLILAVESPIYFANSTYLQERILRWVREEEEHIKANDGASLKCIILDMTAVTAIDTSGLDTLCELRKMLEKRSLQLVLANPVGNVVEKLHKSKILDSFGLKGVYLTVGEAVADISSIWKAQP	654

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst5g00154	654	Gene3D	STAS domain	503	648	IPR036513	-
Spst5g00154	654	ProSiteProfiles	STAS domain profile.	523	646	IPR002645	-
Spst5g00154	654	Pfam	Sulfate permease family	92	471	IPR011547	GO:0016020
Spst5g00154	654	ProSitePatterns	SLC26A transporters signature.	121	142	IPR018045	GO:0008271\|GO:0008272
Spst5g00154	654	FunFam	Sulfate transporter 31	503	649	-	-
Spst5g00154	654	Pfam	STAS domain	524	642	IPR002645	-
Spst5g00154	654	CDD	STAS_SulP_like_sulfate_transporter	524	639	-	-
Spst5g00154	654	PANTHER	SULFATE TRANSPORTER	45	645	IPR001902	GO:0016020\|GO:0055085
Spst5g00154	654	NCBIfam	sulfate permease	79	642	IPR001902	GO:0016020\|GO:0055085
Spst5g00154	654	SUPERFAMILY	SpoIIaa-like	528	645	IPR036513	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g00154	Spst-Chr5	1481238	1485278	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g00154	1	654	Inorganic Solute Cotransporters	AT3G15990	76.067	0.0	1031

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g00154	K17471		-	gmx:100812617	1199.5

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g00154	5	1481238	1485278	Spst5g00154	5	1481238	1485278	ECH
	Spst5g00154	5	1481238	1485278	Spst4g02373	4	64281079	64285004	PCT

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