Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00152 ATGGTTAGCTGCCTCTTTGATCTGCTCCTACGCAAACACTTCTGCATTCTTAACAACCTTAGATCTGGAACGAATTCCCTCCGATTTCATGCTTTCTCTTTCCGACCTGTGTTCCTCTCAGACTCGAAATCAAGGATTCTGGGGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCCCAGACCATGGCAAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCAGCCAAGTTTATTGCACGCCGACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGCGTATATAATTACAACACGATGGATAAGGTTAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCATATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGGTCTGTAACCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTCACATTTAATCCCAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGGACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCACATCAGAAAGGAGTGAATTGCGTTGATTATTTTACAGGTGGTGACAAACCGTATCTAATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACATAATGTATCTGCCGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGGTCGGAAGATGGTACGGTACGCATATGGCACTCCACAACTTACAGGCTTGAGAACACATTAAACTATGGCCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGGGTTCACGTCGAGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTAGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTTGGAGCAGATGTAGAGATTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGTACCTGTGATCTCTACCCCCAAAATCTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAATATATTATATACACTGCATTGGCATGGAGAAATAGATCATTTGGGTCAGCGCTAGAATTTGTTTGGTCTTTTGAGGGAGAATATGCTGTCCGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCTCTTTACTGGCAATGTGCTCCAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTAATCTATCACATTGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGCGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATGTCACATTTAGATAGTGGAAGACTTGTAGATGAGGAAGGTGTTGGAGATGCTTTTGAACTCTTACATGAAATGAATGAACGTGTTAGGACAGGCATGTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGCGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGATCGCCCTATGTACTTGTTAGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACTTTGCTTTTAAGCTTGATAGAGTACAAGACACTTGTGATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAACGACCATCATAACAGTGTGGCTCACTTCCTGGAATCACGAGGAATGATAGAAGATGCTCTTCATGTAGCCACTGACCCTGACTACAGATTTGATCTAGCGATACAACTTGGAAAACTAGATGTTGCGAAGAGTATTGCAGTAGAATTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTTCTGGAAAGTTAGAAATGGCTGAGGAATGTTTACGGCATGCAATGGATTTAAGTGGCTTGTTACTCCTATATTCTTCTTTGGGAGATGCTGAAGGAATATTAAAACTTGCATTCCTAGCCAAGGATCAAGGGAAGAACAATGTTGCATTCCTATGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCCGCTTTAATGGCTCGGTCTTATGTTCCCAGTAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAAGTTGCACTTGCTGTCGAATCTAAAGTTGCAGAAACAAGGAATGCGTACCATCCCGCAGACCAGTACGCTAATCATGCTGACAAATCACACATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAGCAAGAGGGGCACCAGGAGAATGGGGACTCTCATGAGTTGACTGAACAAAATGGAGAAGAGCACTACACAGAGGAACAGAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGACGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGAGTGGGGTACGAATAATGAAGGAGCCCCTGCTTGCCCCACATCACTAGGTCCCATCAAGACAGTCTGTTCCAGCTTCTGGGATATTTATGAGGTTAGGATCAAATTTTCGTATCGCGTTGGCTATGACATCTGGCCTTGCATTTGCAAAAGATGTGAAATCAGTAGGCGTAATCAGTCTCCTCAAGGTGACATGAAGAGGTTTTGTGGACTGGTTGTTTGTTTCCTGGTGTTGTGGTTTGTAGTGCCCTGA 3009 0.4181 MVSCLFDLLLRKHFCILNNLRSGTNSLRFHAFSFRPVFLSDSKSRILGSLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCNQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSFEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGSLLAMCSNDFICFYDWAECRLIYHIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVMSHLDSGRLVDEEGVGDAFELLHEMNERVRTGMWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPNDHHNSVAHFLESRGMIEDALHVATDPDYRFDLAIQLGKLDVAKSIAVELQSESKWKQLGELAMSSGKLEMAEECLRHAMDLSGLLLLYSSLGDAEGILKLAFLAKDQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYVPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKVAETRNAYHPADQYANHADKSHITLVEAFRNMQIEQEGHQENGDSHELTEQNGEEHYTEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEAEEEWGTNNEGAPACPTSLGPIKTVCSSFWDIYEVRIKFSYRVGYDIWPCICKRCEISRRNQSPQGDMKRFCGLVVCFLVLWFVVP 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 111 143 - -
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 196 IPR001680 GO:0005515
Spst5g00152 1002 SUPERFAMILY WD40 repeat-like 243 513 IPR036322 GO:0005515
Spst5g00152 1002 PIRSF Beta'-COP 28 900 IPR016453 -
Spst5g00152 1002 PRINTS G protein beta WD-40 repeat signature 260 274 IPR020472 -
Spst5g00152 1002 PRINTS G protein beta WD-40 repeat signature 174 188 IPR020472 -
Spst5g00152 1002 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Spst5g00152 1002 Pfam Coatomer WD associated region 335 779 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 240 IPR001680 GO:0005515
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Spst5g00152 1002 PANTHER COATOMER 42 329 - -
Spst5g00152 1002 Gene3D - 606 814 - -
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 188 - -
Spst5g00152 1002 FunFam Coatomer subunit beta 606 814 - -
Spst5g00152 1002 Gene3D - 33 316 IPR015943 GO:0005515
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 272 - -
Spst5g00152 1002 CDD WD40 39 313 - -
Spst5g00152 1002 Pfam WD domain, G-beta repeat 193 231 IPR001680 GO:0005515
Spst5g00152 1002 Pfam WD domain, G-beta repeat 149 187 IPR001680 GO:0005515
Spst5g00152 1002 Pfam WD domain, G-beta repeat 107 143 IPR001680 GO:0005515
Spst5g00152 1002 Pfam WD domain, G-beta repeat 236 272 IPR001680 GO:0005515
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 234 - -
Spst5g00152 1002 FunFam Coatomer subunit beta 31 316 - -
Spst5g00152 1002 SUPERFAMILY WD40 repeat-like 37 313 IPR036322 GO:0005515
Spst5g00152 1002 CDD Coatomer_WDAD_beta-like 320 795 - -
Spst5g00152 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 143 IPR001680 GO:0005515
Spst5g00152 1002 MobiDBLite consensus disorder prediction 879 898 - -
Spst5g00152 1002 SMART WD40_4 62 101 IPR001680 GO:0005515
Spst5g00152 1002 SMART WD40_4 104 143 IPR001680 GO:0005515
Spst5g00152 1002 SMART WD40_4 234 273 IPR001680 GO:0005515
Spst5g00152 1002 SMART WD40_4 147 187 IPR001680 GO:0005515
Spst5g00152 1002 SMART WD40_4 190 231 IPR001680 GO:0005515
Spst5g00152 1002 SMART WD40_4 10 59 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00152 Spst-Chr5 1451828 1461998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00152 88 308 Miscellaneous Gene Families AT5G08390 25.792 3.01e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00152 K17302 - gmx:106794271 1708.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00152 5 1451828 1461998 Spst5g00152 5 1451828 1461998 ECH
Spst5g00152 5 1451828 1461998 Spst4g02374 4 64290440 64310335 PCT