Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00145 ATGGATGTTACTTCTTTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTTTGTTGATGGAGCAGCCAGAAACTCGTGATGGTCGTCAACACATAATTGACGTTACTGTGATTGGTGAAACTCTAACCATGTCTTCTCATAACGATCAACACTCTGAAATGCATTTACAGCAGAATGGAGACCAGCCGGCTGGGAACACACAAGATCCAACTCATGAAGTATCTTCATCTTCTGCATCCAGATTAAACTCTAGAAATTCAGCTTCGTTGAGAAGAGGTGAAGGTTATGGTCATCGTGGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTTTTGTCACCGTGAGTCAGATCATAGCATCTATTGTTGTTCTGTCGTTGTCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGGTTGTAGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACCATCTCCAGGATCTTCTGGAAGCAATCCTCCAGATCGTACCTATACTGCCATCTATGTTTCTCATGTTTCAGACGAGGAGAATGGTCATGCTACACAATCAGCCACTAGAAATGCAATAATTCCTGGAGCCTTTACTACAAGGCTTAATGGATTTGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGGAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATACGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAATAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGCAAATGGAGGTGATCAGGATGTCAATACAGCTATAGATGATGATGGAATTTTGGCTGCCGGGACAGAAAAAGAGCGAGTGATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAACTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTTGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACTGAAGTTGGTACGAGTAATGGAGGGTCACCTTCAGCCTGGGACTCCAGTGCACATTAG 1275 0.4141 MDVTSLGSNSNTQTDQHPLLMEQPETRDGRQHIIDVTVIGETLTMSSHNDQHSEMHLQQNGDQPAGNTQDPTHEVSSSSASRLNSRNSASLRRGEGYGHRGSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSNEQDSSQPSPGSSGSNPPDRTYTAIYVSHVSDEENGHATQSATRNAIIPGAFTTRLNGFVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATIESINALPIFKFKLKNNANGGDQDVNTAIDDDGILAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTSNGGSPSAWDSSAH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00145 424 MobiDBLite consensus disorder prediction 1 20 - -
Spst5g00145 424 SMART ring_2 364 404 IPR001841 -
Spst5g00145 424 Pfam Ring finger domain 364 405 IPR001841 -
Spst5g00145 424 SUPERFAMILY RING/U-box 355 411 - -
Spst5g00145 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
Spst5g00145 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Spst5g00145 424 MobiDBLite consensus disorder prediction 50 99 - -
Spst5g00145 424 MobiDBLite consensus disorder prediction 1 30 - -
Spst5g00145 424 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Spst5g00145 424 SMART ringv_2 363 405 IPR011016 GO:0008270
Spst5g00145 424 FunFam E3 ubiquitin-protein ligase 347 414 - -
Spst5g00145 424 MobiDBLite consensus disorder prediction 50 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00145 Spst-Chr5 1387111 1389718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00145 1 415 C3H Transcription Factor Family AT1G80400 56.573 3.88e-165 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00145 - - gmx:100819516 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00145 5 1387111 1389718 Spst5g00145 5 1387111 1389718 ECH