Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00143 ATGGACAAAGAAGGTCTCGGGCTTGAAATCACTGAGCTCAGACTCGGCCTTCCCGGTGCGGAGAACAACGAGAAGGAGAACAAGAAGAGGGTCTTCTCGGAGATTGAAGGTGAAAACAGCTCCTCTGAAGAAGAAGATCGCAAAAAAGAAACCAAGAATCAGGTCGTGGGGTGGCCTCCGGTGTGCTCCTACCGCAAGAAGAACAGCGTCAATGAAACCAAAATGTACGTCAAAGTTAGCATGGACGGTGCTCCTTTCTTGCGTAAAATTGATTTAGCTATGCACAAGGGCTACTCCGAGTTGGCCTTTGCCTTGGACAAGTTCTTCGGTTGCTACGGAATCGGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGTTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGAGAAAATGA 552 0.4746 MDKEGLGLEITELRLGLPGAENNEKENKKRVFSEIEGENSSSEEEDRKKETKNQVVGWPPVCSYRKKNSVNETKMYVKVSMDGAPFLRKIDLAMHKGYSELAFALDKFFGCYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVRK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00143 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 163 IPR003311 GO:0005634|GO:0006355
Spst5g00143 183 FunFam Auxin-responsive protein 67 170 - -
Spst5g00143 183 MobiDBLite consensus disorder prediction 18 52 - -
Spst5g00143 183 SUPERFAMILY CAD & PB1 domains 68 159 - -
Spst5g00143 183 MobiDBLite consensus disorder prediction 19 52 - -
Spst5g00143 183 ProSiteProfiles PB1 domain profile. 74 162 IPR000270 GO:0005515
Spst5g00143 183 Pfam AUX/IAA family 39 166 IPR033389 -
Spst5g00143 183 Gene3D - 68 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00143 Spst-Chr5 1357650 1359757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00143 33 181 B3 DNA Binding Superfamily AT4G23980 30.872 1.83e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst5g00143 AUX_IAA 4.5e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00143 K14484 - gmx:100811879 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00143 5 1357650 1359757 Spst5g00143 5 1357650 1359757 ECH
Spst4g02379 4 64351931 64354649 Spst5g00143 5 1357650 1359757 PCT