Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00142 ATGTCGTCGCAATCACTGAGTAGCATCCACTCGTCAGAAGCTGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACACTGGGTCTTCCCGGTACAAAAACTGCTACCAAACGTCCCTTCTCCGACACCGTTCATCTTCATCATCTTCCCAATTCTCTAAGTAAATCCAAATTCCCAACACCCAAGGAACAAATGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCCATGAAGAGTTGCAAGTTCGTGAAGGTGGCTGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGACAGTTATGAGCATTTGATGAGGGATTTAGAGACCATGTTTTGTGGCTTAGCCATTCATAATCATTTGATGAACGAGAGAAAACTCATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACCGAGATGGTGACTGGATGTTGGTCGGGGATGTGCCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCTATTGGCTTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCAATCTAG 585 0.4615 MSSQSLSSIHSSEADAVDCNLKETELTLGLPGTKTATKRPFSDTVHLHHLPNSLSKSKFPTPKEQMVGWPPVRASRKNAMKSCKFVKVAVDGAPYLRKVDLEMYDSYEHLMRDLETMFCGLAIHNHLMNERKLMESGNGIEYMPTYEDRDGDWMLVGDVPWKMFVESCKRIRLMISSEAIGLGPRSSSKCSGSI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00142 194 FunFam Auxin-responsive protein 78 186 - -
Spst5g00142 194 Gene3D - 77 188 - -
Spst5g00142 194 ProSiteProfiles PB1 domain profile. 83 178 IPR000270 GO:0005515
Spst5g00142 194 SUPERFAMILY CAD & PB1 domains 75 175 - -
Spst5g00142 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 181 IPR003311 GO:0005634|GO:0006355
Spst5g00142 194 Pfam AUX/IAA family 34 185 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00142 Spst-Chr5 1350955 1352082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00142 27 184 B3 DNA Binding Superfamily AT4G23980 30.247 2.38e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst5g00142 AUX_IAA 9.6e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00142 K14484 - gmx:100815098 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00142 5 1350955 1352082 Spst5g00142 5 1350955 1352082 ECH