Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00139 ATGAGTGGGAAGAAGAGTTGGCTGAGTGGCATGAAAGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAGGGACTCTACGACACTTCCACCATCTTCTTCGACGGCGCCGTTGCCCAAATCAACAACCACCTCAACTCCGTCGACGACCCTTTAGTGAGAGCCAAATGGATGAACGTGAAGAAAGCGCTATGCGAGGAAACCCAGGTGGTGAAACAACTAGACGCAGAGAGAAGAGCGTTTAAGGAAACTCACCCTGCTTCGCGACCACGATCAAAATCATCCTCCTTTGTTTTTCAACCGTTGGACGAGTATCCCATTCCCACTACCTCTCCTCGCGCTTCCTCCATCGACGATCATGACCCCGACGTGTGGAGACCGCCCAGTCGAGATGCCAGAAAGCCCATCAGGCCCACTGCTCGAAAGGACGGGGCTTGGGGCCGAGGCTCTACCAGGCCCGCTCCTCGTGCTGTACAGCCCAGCCGGGTTAGCTCTGGGGCCCGACCACCCACCAATGGAAAGAAAGGCGGCGGCGGCGGCGGTGCTGGAAAGTGGAGCAGGACAGGTGATTCTTCACATTCACTTCATGGAGATGGTGGTGGTGAGGATGGGAAAAAGTCAAAAAAGTATGAGTATGAAGGTCCTGATCCTGAGTTGGCGGAAATGTTGGAAAGAGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGACGATGTTGCAGGCCTGAGTGAAGCAAAAAGGCTTCTAGAAGAAGCACTTGTACTTCCCTTATGGATGCCTGAATATTTCCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTCGGGCCTCCAGGAACTGGAAAAACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACAACTTTCTTTAACGTTTCCTCTGCTACGTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTAAGATGCTTGTTTGATCTTGCAAGAGCATATGCACCCAGTACCATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTCAAGTCTGAACTTCTAGTTCAGATTGATGGTGTAAACAATAGTTCCACAATTGAAGATGGCACCCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGAGCCGTAAGGAGCTGATTCGTATCAATTTGAGGACTGTGGCTGCAGATATGAAGATAGATGAAGTGGCCAAACAGACAGAGGGATACAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCTCTGAATGGTATGAGGCGTAAGATAGCGGGAAAGACGCGTGATGAGATCAAGAACATGTCCAAGGATGAGATTTCCAAGGACCCTGTTGCAATGTGTGATTTTGAACAAGCTTTGAAGAAAGTTCAACCAAGTGTTTCTCAGGGTGACATTGAACGCCATCGAAAGTGGTTTGCCGAATTTGGATCAGCTTAA 1560 0.491 MSGKKSWLSGMKEHLKLAREYAAEGLYDTSTIFFDGAVAQINNHLNSVDDPLVRAKWMNVKKALCEETQVVKQLDAERRAFKETHPASRPRSKSSSFVFQPLDEYPIPTTSPRASSIDDHDPDVWRPPSRDARKPIRPTARKDGAWGRGSTRPAPRAVQPSRVSSGARPPTNGKKGGGGGGAGKWSRTGDSSHSLHGDGGGEDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLSEAKRLLEEALVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQIDGVNNSSTIEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTVAADMKIDEVAKQTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEQALKKVQPSVSQGDIERHRKWFAEFGSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00139 519 FunFam Katanin p60 ATPase-containing subunit A1 411 495 - -
Spst5g00139 519 MobiDBLite consensus disorder prediction 116 141 - -
Spst5g00139 519 Gene3D - 6 82 - -
Spst5g00139 519 MobiDBLite consensus disorder prediction 81 213 - -
Spst5g00139 519 Pfam Vps4 C terminal oligomerisation domain 472 517 IPR015415 -
Spst5g00139 519 FunFam Katanin p60 ATPase-containing subunit A1 231 399 - -
Spst5g00139 519 Pfam AAA+ lid domain 432 471 IPR041569 -
Spst5g00139 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 504 IPR027417 -
Spst5g00139 519 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 9 519 IPR028596 GO:0008017|GO:0008568|GO:0051013
Spst5g00139 519 FunFam Katanin p60 ATPase-containing subunit A1 6 82 - -
Spst5g00139 519 CDD Kp60-NTD 9 77 - -
Spst5g00139 519 Gene3D - 231 509 IPR027417 -
Spst5g00139 519 PANTHER AAA DOMAIN-CONTAINING 27 518 - -
Spst5g00139 519 SMART AAA_5 269 412 IPR003593 GO:0016887
Spst5g00139 519 ProSitePatterns AAA-protein family signature. 382 401 IPR003960 GO:0005524|GO:0016887
Spst5g00139 519 MobiDBLite consensus disorder prediction 196 213 - -
Spst5g00139 519 Pfam ATPase family associated with various cellular activities (AAA) 273 410 IPR003959 GO:0005524|GO:0016887
Spst5g00139 519 Gene3D - 411 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00139 Spst-Chr5 1331202 1334124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00139 225 464 Calmodulin-binding Proteins AT3G56690 43.089 3.51e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00139 K07767 - gmx:100801219 776.933