Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00062 ATGGACCTTATGTGGTCAGAGCCACGTCCATCGTCTGAAAATGATTTGAACATGCCATTTTCAGAGACTCCTCCACCTTGCTCAAAGTCAGTTCTACCTTCCATGGATATCGAAAAGGAGAAGAAGGAGAACAAAGAACATGCCTATGAGTCGGCTCCATTGCACCTTGCGCTGGATTCAGGTGATGAGTCAAAGCCAGAACTCAACCTCATCAACTGTATCGATGCAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGAGGAGGACACGGTGATGCACTGGAGCCCAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACACCAGAATGCACATAAGCGAGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTCCAATAGATTTTGCACACAAGTACTCCAGCATGGCTTCTCTGCCTTTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCGCATTCTATGATCAACAAACCCTCTTTTCAAACACAAACACCATTTTTTGGTTTGTCCCGTTCCCATGCTCAAAATGGCTGGCAGAAGCGGCCTTTGTACTCACAACAGGCAACTGGGGCAGAAACTGAGTCACCCTTGGCTGGTGGCATCCAACGCTTGGGGAAGTTTTCTCCAAGGCTGTTGCCAGAGGGATTTGGAGGCTACTGGTTGGATAGTATTAACCATTTGAAGACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 780 0.4679 MDLMWSEPRPSSENDLNMPFSETPPPCSKSVLPSMDIEKEKKENKEHAYESAPLHLALDSGDESKPELNLINCIDANLSMNSSESSHGGGHGDALEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVPIDFAHKYSSMASLPLHGSYNRSLGIQAHSMINKPSFQTQTPFFGLSRSHAQNGWQKRPLYSQQATGAETESPLAGGIQRLGKFSPRLLPEGFGGYWLDSINHLKTKQEELQKLDLSLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00062 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Spst5g00062 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 39 259 IPR044246 GO:0009788
Spst5g00062 259 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Spst5g00062 259 Coils Coil 243 259 - -
Spst5g00062 259 MobiDBLite consensus disorder prediction 10 28 - -
Spst5g00062 259 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Spst5g00062 259 MobiDBLite consensus disorder prediction 1 48 - -
Spst5g00062 259 Gene3D Classic Zinc Finger 82 147 - -
Spst5g00062 259 FunFam Zinc finger protein 2 77 146 - -
Spst5g00062 259 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00062 Spst-Chr5 703374 704153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00062 1 259 C2H2 Transcription Factor Family AT5G10970 37.024 3.60e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00062 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00062 - - vun:114185863 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00062 5 703374 704153 Spst5g00062 5 703374 704153 ECH