Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00061 ATGAAATTACCCCGCTTGGAAAAGGAGGGAACTTGGTGGGGCCATGGTTTCATAGAGGAGAAAGCCGCAAAAGACTATTATATAAATGAGTGTTACCACCCTCTCCTCGCCATGACCACTTCACTTTCACATTCTCAAAGACGCTTCACCAACAAGTTTGAAGCACCAATCTCCATCATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTCTTGAAGACCAGAATATGGCTAGGAACGTTTGAAACAGCGGAAGATGCAGCCAGAGCGTACGATGAAGCAGCAAGGTTAATGTGCGGGCCAAAAGCACGCACCAATTTCCCTTACAATCCCAACGAGCCACAATCATGTTCATCGAAGCTCCTTTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCTCTTCAAATGAGCAAGCAGAAGCAATCGCAGAAAGAGGCTGAAGGGTCATCCAATTCAGGCCACACCATTGCAGGAACGAGTGCAGACACAACAGGGTTTAAATGGCCAGAGAAAAGACACGAGGAAGTGCAGTGGCTAGAAGAAGACCATGTTGAAGTGGGAGAAGCAGAACAGCAACAATTTCAGCCAGTTCTTGAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTCATTATGGGTCAATGGAGTTTTGTTCTGTTACTCAGTCTAGCTAA 741 0.475 MKLPRLEKEGTWWGHGFIEEKAAKDYYINECYHPLLAMTTSLSHSQRRFTNKFEAPISIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPQSCSSKLLSATLTAKLHKCHMASLSLQMSKQKQSQKEAEGSSNSGHTIAGTSADTTGFKWPEKRHEEVQWLEEDHVEVGEAEQQQFQPVLEDDHIEQMIQELLHYGSMEFCSVTQSS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00061 246 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Spst5g00061 246 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Spst5g00061 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 58 180 - -
Spst5g00061 246 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Spst5g00061 246 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Spst5g00061 246 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Spst5g00061 246 MobiDBLite consensus disorder prediction 156 183 - -
Spst5g00061 246 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Spst5g00061 246 MobiDBLite consensus disorder prediction 156 189 - -
Spst5g00061 246 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Spst5g00061 246 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Spst5g00061 246 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00061 Spst-Chr5 696234 697199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00061 60 242 AP2-EREBP Transcription Factor Family AT5G25190 63.212 1.11e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst5g00061 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00061 - - gmx:100812021 326.25