Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00054 ATGGACCAAGCATGGCAGAACTGGTCTCTTCACATGGAAATGGATGATGATGATGATGGGCATAGGGATCTGTGGTTAGAAGAGTGCCACACCCAAGAAGAGGAGTTCCTCAGGGACATCCTCAGTCAACCGGCTTTTTCTTCTGAAAGTGAAAGTCAACCTTTCGACCGCCACAACAATAACTTAACAACCCCCACAGATGGTAGCACTTTATCCTCCGATGAAACGGTAACAGCCAGAAGGCCTAACCCCTCAAATTCCTCTCCGAGGACATACATTTTGTCTTTCGATAGCTCTACCATTATACCAGCTACCCCTCAACCACAAACCTCCTCTAAATCCTCTACTTCATCTCTCTCCTCCAAAAAACGCCACCAAAATCTCAACCTAGAACAGCCAAAACCAAAGTCAACCACTCTTGCTGGAAAGAGGGGCAGAAACAGTTCCCAGTCTCTGGATCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACTATCCCTGGCCTCAAGAAGACGGACAAGAGTTCAATACTTGGCGAAGCGATTAATTACGTGAAGGAACTTCAAGAGCGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCAGTGATGATGATCCTGAAGAAGAGTGATGGGTGTGGAAACGAAGATAGTAGTAACTCAAGTGAAACAACAGATTCGAAGGATTGGTGTAGGATGCTCCCTGATGTTGAAGCAAGAGTGATGAAGAATGAGGTACTCATTGAGATCCATTGTGAGAAGGAAGAAGGGGTTGAGCTCAAACTACTGAACCACCTTGAAAATCTCCATCTCTCCGTCACCGCCACCAGCGTATTGCCCTTTGGGAATTCATCTCTCGGCATTACTATCATCGCTCAGATGAGTGACGCATACAAGATGACAGTGAACGATGTAGTGAAAAATCTAAGGAAAGTGCTCTTGAATCACATGAAGATCCATAGCGATCCGTACTAG 1014 0.4586 MDQAWQNWSLHMEMDDDDDGHRDLWLEECHTQEEEFLRDILSQPAFSSESESQPFDRHNNNLTTPTDGSTLSSDETVTARRPNPSNSSPRTYILSFDSSTIIPATPQPQTSSKSSTSSLSSKKRHQNLNLEQPKPKSTTLAGKRGRNSSQSLDHIMAERKRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELQERVTELEERNKRGKESVMMILKKSDGCGNEDSSNSSETTDSKDWCRMLPDVEARVMKNEVLIEIHCEKEEGVELKLLNHLENLHLSVTATSVLPFGNSSLGITIIAQMSDAYKMTVNDVVKNLRKVLLNHMKIHSDPY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00054 337 Pfam Helix-loop-helix DNA-binding domain 154 199 IPR011598 GO:0046983
Spst5g00054 337 Gene3D - 148 221 IPR036638 GO:0046983
Spst5g00054 337 PANTHER BHLH TRANSCRIPTION FACTOR 35 329 - -
Spst5g00054 337 Coils Coil 188 215 - -
Spst5g00054 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Spst5g00054 337 SMART finulus 155 204 IPR011598 GO:0046983
Spst5g00054 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 216 IPR036638 GO:0046983
Spst5g00054 337 MobiDBLite consensus disorder prediction 45 152 - -
Spst5g00054 337 MobiDBLite consensus disorder prediction 45 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00054 Spst-Chr5 646049 647909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00054 136 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.128 6.96e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00054 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00054 - - pvu:PHAVU_005G181300g 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02452 4 64867303 64872198 Spst5g00054 5 646049 647909 PCT