Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00053 ATGCAAGACCATGTGAAAGATGTGATGGGGCCTGGGGTTCCGATTTTGGCTTGGGAAATGGAAGATGAGGTGGTGGATGAATGTTTGTGCCACACGAATCACTTTGATGAGGAGTTCCTAAGAGATATTCTGCAGCAGCCACAAGAGGCCCTTGTTGCTGCTCCAGATCTTAATACCTTTGGTGAGACAAGCTTTCCAGGTGGTGGCAACTTCATGATGAAGAACAGTAACTCATACTCATCCATCATGAACAAGCCAACGTCATCCCCAACCACTTATGTACTGTCTTTTGACAAATCCGCTGAACCTCATCCTTGGAAAGATGTCTCCCACGACCAATTGCCCTTGTCCACGGCAAGGACCAACCAGGGAACCAAGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATCATTTCAGAGAGAAATAGGAGACAGGATCTCACCAGGAAATTCATAGCACTTGCTTCCACTATCCCTGGCTTAAAGAAGATGGACAAGGCCCATGTACTAAGAGAAGCAATCAATTATGTGAAACAACTTCAAGAACGTGTGGAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGTGGAATCAGCGATAACCATATCAAGATCTCATCTCTGCATTGATGACACCAACAGTGATGAATGCAATGGCTCCAATGAAGCAGTTCCTCCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAGTGTTGATCAAAATTCACTGTGGCAAACAAAAGGGAATTCTGCTCAAAATAATGTCTCAGCTTGAACGTCTTCATCTCTTCATATCCACCAGCAATGTTTTGCCACTTGGAATTACCCTTGACATCACCATTATTGCTCAGATGGGTGACAAATACAACATGGTAGTGCAGGACCTAGTGAAAGAACTGAGACGAGTGGTTTTGAAAGTAAGTTACCTAAGAGGCACTGGGGAAAGATACAATGTTTTGAATAGAGAAGGTCTGATTGAAGCAGGAAAAAATGAGGAGAAAGGGTGTTGGAATAATGAGCGGAGTGATGAGTTGGATGGTGGTGTCGCAGAGTGGCCATGCACGCGTGGAAGATGTTGGGAAGCACTCCATGATATGATGCACTGGGTCGCGAAAGAGCCATTGTTGTCAACTTGGAACGCGTCAAAGTCATCATCACTGCCTCTGAGATACTCATCATCGACTCCTCCAACCCTTCCTTTCTTGCCTTCCTTCAAGATCTTCACACCCGTCTTACTCACCAAACAACCTCCACGTCCACAGAATATTGTGACAGGCTCACCAACTTCTACGCAGTTACCTTTTGAATTTGGAGTACTTGAGGCGTGTATTGAATCTGCATGCAGGTGCCTTGAATCTGATAATGCGGAGTTGGACAATTCACGGGGAAACCATTTATTCATGGGGATCCCTTTTGCCAATTTTGCAAAGCCACACAAATGCTCCACTACACAAATTGAGAGTAGACTGGTATGTGAAGGTTTACAGGTAGCAGATGAACTGGAAAATTTGTTGGACGACAATAATGACATGGCTGACATGTACTTGACCCAAAAGCTTAATGATCGTTTATTTGATCAGACATCATTAAAAGAAGGGTACAATTCCGAAGTTGAAGACATTGATGAAAGGTAA 1635 0.4416 MQDHVKDVMGPGVPILAWEMEDEVVDECLCHTNHFDEEFLRDILQQPQEALVAAPDLNTFGETSFPGGGNFMMKNSNSYSSIMNKPTSSPTTYVLSFDKSAEPHPWKDVSHDQLPLSTARTNQGTKKTRSASESMDHIISERNRRQDLTRKFIALASTIPGLKKMDKAHVLREAINYVKQLQERVEVLEEDIQKNGVESAITISRSHLCIDDTNSDECNGSNEAVPPEVEARVLGKQVLIKIHCGKQKGILLKIMSQLERLHLFISTSNVLPLGITLDITIIAQMGDKYNMVVQDLVKELRRVVLKVSYLRGTGERYNVLNREGLIEAGKNEEKGCWNNERSDELDGGVAEWPCTRGRCWEALHDMMHWVAKEPLLSTWNASKSSSLPLRYSSSTPPTLPFLPSFKIFTPVLLTKQPPRPQNIVTGSPTSTQLPFEFGVLEACIESACRCLESDNAELDNSRGNHLFMGIPFANFAKPHKCSTTQIESRLVCEGLQVADELENLLDDNNDMADMYLTQKLNDRLFDQTSLKEGYNSEVEDIDER 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00053 544 Coils Coil 171 198 - -
Spst5g00053 544 Pfam Helix-loop-helix DNA-binding domain 137 182 IPR011598 GO:0046983
Spst5g00053 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 198 IPR036638 GO:0046983
Spst5g00053 544 SMART finulus 138 187 IPR011598 GO:0046983
Spst5g00053 544 Gene3D - 122 196 IPR036638 GO:0046983
Spst5g00053 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Spst5g00053 544 PANTHER BHLH TRANSCRIPTION FACTOR 76 306 - -
Spst5g00053 544 Gene3D Magnesium transport protein CorA, transmembrane region 408 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00053 Spst-Chr5 635116 641418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00053 123 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.842 2.01e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00053 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00053 - - vum:124843254 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00053 5 635116 641418 Spst4g02453 4 64877001 64878889 PCT