Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00052 ATGTGGAGTTCAACTTCAACCACAGCGATTGCAGCGTCCTCTTCCGACGAGGATCCCAGCGAATCCTTCTCATCTTCCTTCTCCACCTCTCTCTTCAATTTCTCCTCTGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCTCCAACGACACTCCTGCCACCCTTCCCGTTGGACGGAAACCTCTCGTTTGCGTTGTCGGCGTCCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCTCTGGTTCCTTCATTCAGCACATGCTAGAGATGCGCATTGTTAGGATGGATGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACGACCAAGACTCCACTGACAGCTTCTACAAGCACTACAATGGCCGCCGTTTCTCCTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATCGAACATGCACAACCCTCGAATGCTAGTTCAACCGAACAGCCGACGTGTCCTGTTTGCCTCGAGCGTTTAGATCAGGACACCAGTGGAATTCTTACTACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCTGATTCTTCCTGTCCTGTATGCCGCTATTGCCAACAGCAAGCTGAAAAATCCATATGTTTTATTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGATACGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCACTTGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACACTCACTGTGCACACACAGACAATGGATGTGGAAGTTGCAGCTGTGGAGATAATGCCATGAGTGAGGCTAAACTTAATAGTAAAGTTGAAGCTATTGTCAACGAGTACAATGACTTGCTTGCTACTCAACTTGAAAACCAAAAAACATATTTTGAATCCTTACTACAAGAAGTACAAGAAGAATCTGAGAGAAAAATATCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAACAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAGTTTCTGGATGATCTCAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAAAAAAGCAAAGAGACTAATGGAAGATAGAGTAGCAACCCTGGAAAAGCAGCTTGGAGATCTCATGGTTTGTCTTGAGGGTGGGAAGACGGTAGAAGAGCTACCCGTTTCATAA 1353 0.4427 MWSSTSTTAIAASSSDEDPSESFSSSFSTSLFNFSSGNPRIEETRGLMHLFSNDTPATLPVGRKPLVCVVGVPNHMTYADFCQFSGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFICQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHTDNGCGSCSCGDNAMSEAKLNSKVEAIVNEYNDLLATQLENQKTYFESLLQEVQEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKILEIEEREKKAKRLMEDRVATLEKQLGDLMVCLEGGKTVEELPVS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00052 450 CDD RRM_BRAP2_like 67 148 - -
Spst5g00052 450 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Spst5g00052 450 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Spst5g00052 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 291 IPR013083 -
Spst5g00052 450 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Spst5g00052 450 CDD RING-H2_BRAP2 167 210 IPR047243 -
Spst5g00052 450 PANTHER BRCA1-ASSOCIATED PROTEIN 10 444 - -
Spst5g00052 450 SUPERFAMILY RING/U-box 185 284 - -
Spst5g00052 450 Coils Coil 378 398 - -
Spst5g00052 450 SMART ring_2 169 208 IPR001841 -
Spst5g00052 450 Coils Coil 410 430 - -
Spst5g00052 450 MobiDBLite consensus disorder prediction 1 21 - -
Spst5g00052 450 Pfam Ring finger domain 168 209 IPR001841 -
Spst5g00052 450 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Spst5g00052 450 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Spst5g00052 450 Coils Coil 334 372 - -
Spst5g00052 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00052 Spst-Chr5 620818 633259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00052 165 209 C3H Transcription Factor Family AT1G72220 48.936 1.76e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00052 K10632 - gmx:100794688 818.92