Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00049 ATGGACAGTAACGAGGAAATCCCCTCCACACCTGCAACCCCAGGTACTCCTGGTGCACCTCTTTTTGGTGGTTTCAACAATGGCAGGAATAGGACTAATAGTAACAAGAAGTCCCTTCTCAAGAGTTGTAGGTGCTTCAGTGTGGAGGATTGGAGCATCGAAGATGGAGGCTTACCCGCCGTCTCTTGCTCATTGCCACCCCCTCCTCCAGTCCCTCTTGCCAGAAAGGTTGGTGCGGAGTTCATTGGGACTTTCATTCTCATGTTCGCTGCTACTGCTGCTGCCATTGTCAACCAAAAGACAAACGGCTCTGAGTCCCTCATAGGGTGCGCTGCCACCACTGGTCTCGCCGTTATGATCGTCATCCTCGCCACTGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCCTCTCCTTTGCTGCATTAAAGCACTTCCCTTGGAAACATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATCTGTGCTGCATTTGCTCTGAAAGGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACCGTCCCTTCCGGAGGATATGGCCAAGCTTTTGCTTTGGAGCTCATTATTGGCTTCAATCTCATGTTCGTTGTCACTGCTGTCGCCACCGACACCAGAGCCGTGGGAGAACTCGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAATATACTCATAGCAGGGCCAGTAACAGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTATCGCCGCAAACAACTACAAAGCCATATGGGTTTATCTGGTAGCTCCCGTACTTGGAGCTTTAGCTGGGGCAGGTACCTACACTGCAGTGAAACTGCCCGAAGAAGACGATGACGCCAAGGCAAAGGCTTCAATCAGCTTCAGAAGGTGA 909 0.5182 MDSNEEIPSTPATPGTPGAPLFGGFNNGRNRTNSNKKSLLKSCRCFSVEDWSIEDGGLPAVSCSLPPPPPVPLARKVGAEFIGTFILMFAATAAAIVNQKTNGSESLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYGQAFALELIIGFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVTGGSMNPVRTLGPAIAANNYKAIWVYLVAPVLGALAGAGTYTAVKLPEEDDDAKAKASISFRR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00049 302 MobiDBLite consensus disorder prediction 1 27 - -
Spst5g00049 302 Pfam Major intrinsic protein 73 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Spst5g00049 302 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 FunFam Aquaporin NIP2-1 63 295 - -
Spst5g00049 302 CDD MIP 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00049 302 Gene3D Glycerol uptake facilitator protein. 70 295 IPR023271 -
Spst5g00049 302 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Spst5g00049 302 PANTHER AQUAPORIN NIP2-1 37 288 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00049 Spst-Chr5 610855 613978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00049 1 302 Major Intrinsic Protein MIP AT1G80760 76.052 1.34e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00049 K09874 - gmx:100815637 485.723