Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00047 ATGGCTGAAATGTACATGATTCAAAAGCTTAATGCTCGTATATTTTTGGACCAGATTTCAGTAAAAGACGGATACAATTCCAAAGTTGGAGATATTGATGAAAGTCCTAAACTTGATGTTGAGGAATTGGAGATGCTTCTAGAAGAAAATTTTGCGCAGACAACTGGAATCTTTCAAAGATTTCTAGTAGTGGACTACATAATATTGGATTTTCTGCAGGCAGCAATAGTATTCGACACCCTGAACTTGATAATTAATGCGGTTATGGTGGTGGTGGGATTGTTTACATGGATCTCCTTTATGGTTAATCTCGCCAATTTTGGGTTACAACTTGGGGTACTTTGGGAGGATGTATACTTCTATTCCTTATATGTTTATGGTGGGGAAGAAAATATGTTCTCTCATTTGAGCTTAAAGCAGGGAGCTAGGGGTTTCGCCGATTACTCCTCAACAAGGAAGCAAAGCGTGTCTTTTGAGTTCAACAAGAAAAGATGTCAGGTTGAAAGATCTATTCCAAATCATGTTATTGTGGCCGGAGAATGGTTCCTTCAGAATGAAAAGTTTGGTAGTGAGGACATATATACTAATTACAATGTCTATTCGTTGTTATGTCTTGCCTTAGGCATACTTTTACTATGCAGTGAAGAAGTAGCTGTTGCAGCTGAGGCACCTGCTTCCATTCCCGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGTCTTCATGAAGGTGCTAAGATCATTGAGAAGCACGCAGCACAGCTATGCGTTCTAGCAGAAGATTGTGACCAACCCGATTATGTGAAACTGGTGAAGGCCCTTTGTGCAGAGCATAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACGCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGCTAGGAAGGTAACTGGATGCTCATGTGTTGTTGTTAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAAGCTAACTGA 1056 0.4119 MAEMYMIQKLNARIFLDQISVKDGYNSKVGDIDESPKLDVEELEMLLEENFAQTTGIFQRFLVVDYIILDFLQAAIVFDTLNLIINAVMVVVGLFTWISFMVNLANFGLQLGVLWEDVYFYSLYVYGGEENMFSHLSLKQGARGFADYSSTRKQSVSFEFNKKRCQVERSIPNHVIVAGEWFLQNEKFGSEDIYTNYNVYSLLCLALGILLLCSEEVAVAAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00047 351 PRINTS Ribosomal protein S12E family signature 321 334 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst5g00047 351 PRINTS Ribosomal protein S12E family signature 241 254 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst5g00047 351 PRINTS Ribosomal protein S12E family signature 296 317 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst5g00047 351 PRINTS Ribosomal protein S12E family signature 255 271 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst5g00047 351 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 237 330 IPR004038 -
Spst5g00047 351 SUPERFAMILY L30e-like 231 349 IPR029064 -
Spst5g00047 351 FunFam 40S ribosomal protein S12 218 351 - -
Spst5g00047 351 ProSitePatterns Ribosomal protein S12e signature. 237 255 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst5g00047 351 Gene3D - 217 351 IPR029064 -
Spst5g00047 351 PANTHER 40S RIBOSOMAL PROTEIN S12 227 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00047 Spst-Chr5 599369 603815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00047 227 351 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 2.85e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00047 K02951 - gmx:100500093 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00047 5 599369 603815 Spst4g02476 4 65007310 65008467 PCT